Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e03r
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980           31   0.74 
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     29   3.0  
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           29   3.0  
07_01_0622 - 4625246-4627759                                           29   3.9  

>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
          Length = 208

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -2

Query: 411 DDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVL-GVGTNWNGDHMAF 235
           DD R      +D+ S   +W +  L  N      + +    +YL       +WN + +  
Sbjct: 24  DDDRSGVSLQQDRASVHAAWAVHILHFNGGDVLMLHSAANGRYLAAYRAEGSWNVERL-- 81

Query: 234 GVNSVDSFRAQWYLQPAKYDNDVL 163
            +N + S    WY   ++Y +DVL
Sbjct: 82  NLNRLPSLTFSWYALGSRYGDDVL 105


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 717 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 544
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+   +     +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294

Query: 543 LQGSKDIVRDCFP 505
            + +  +++  FP
Sbjct: 295 SKSAWQVIQCAFP 307


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 481 GEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFVH 603
           GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 59  PITLPLYPQAMR*PEGSTVLDSVKALLY 142
           P+TLPLYPQ+M   + ST  D  +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,596
Number of Sequences: 37544
Number of extensions: 349876
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)