Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e03r
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   2.0  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   8.1  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   8.1  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 675 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 565
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 675 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 565
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 618 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 442
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 618 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 442
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 387 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 289
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 387 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 289
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 548 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 441
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 396 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 244
           ++G   +   PR  ++ I+ +   +    YF++L+ E N+Y+++    N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182


>Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical
           protein K01D12.5 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 4   TLYYNLESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSLA 138
           T Y N++++  P  M+G++  S VVS G++ + G N+     ++A
Sbjct: 91  TGYSNIQTVGQPYQMYGSAPGSNVVSGGNSESYGYNQQAPVPTVA 135


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 30  LYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKP 134
           LY K    D  + C C+    G+P+   S+T  KP
Sbjct: 83  LYDKVQCYDVSIYCWCVDELSGEPKLGSSTTRGKP 117


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 536 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 441
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 126
           L+++   S+  G S   AV   GH  T GLN   QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 678 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 505
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 504 VEFRLIFA 481
           ++    FA
Sbjct: 88  IDMDAYFA 95


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 126
           L+++   S+  G S   AV   GH  T GLN   QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,258
Number of Sequences: 27780
Number of extensions: 294537
Number of successful extensions: 970
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)