Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e02r
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    25   0.55 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.0  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 MKHFLFRKLKWNFRYCFKQYCEFYQVFFK 466
           M +F  + LK +F   F+QYC  +++  K
Sbjct: 2   MDNFTLQSLKKDFGTYFQQYCLHHKILIK 30


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 127 LRESLDTRILSTCTFNLLKIMRMVYLLL 44
           L +  DT++  TC F    ++ +++++L
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 127 LRESLDTRILSTC 89
           +RESLDT+ L  C
Sbjct: 334 IRESLDTQFLQVC 346


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 127 LRESLDTRILSTCTFNLLKIMRMVYLLL 44
           L +  DT++  TC F    ++ +++++L
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = -2

Query: 100 LSTCTFNLLKIMRMVYLLLKHLFVYSYLCELL 5
           L++C+F+ L     + + +  +F +SY   ++
Sbjct: 194 LTSCSFDYLTDTNEIRIFVATIFTFSYCIPMI 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,440
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)