Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e02f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.6  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.7  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 496 REGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDN 389
           REG      T+VLV    G +L+A    G GG  ++
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFES 346


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 ETGYCIKCYQCNSEQDKNCG 175
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +2

Query: 245 YLRNILPVEVLNSVTGAPRYC----HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNT 412
           Y  + LP+  ++  T A R      ++ + + G V    L++  N       V  LAS  
Sbjct: 509 YDADCLPMTFIHIATSAARIILVKLNENIPEDGDVCNIYLEIITNALDVCANVWPLASQA 568

Query: 413 AIADSAKVKSCAVCNKDN 466
           + A     KSCA   K+N
Sbjct: 569 SRAILNAYKSCATSPKEN 586


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 434 VKSCAVCNKDNCNGAGSISFSLPLATFA 517
           ++SC VC+   C    S+ F L +  FA
Sbjct: 301 LRSCLVCDSFVCPSCISLDFDLQIQAFA 328


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 197  PPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 307
            PPV    +DSI    + L++++ + +L+  T A R C
Sbjct: 981  PPVYRKKEDSIYLLDMCLQSVVNIPLLSIKTTAQRNC 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,015
Number of Sequences: 5004
Number of extensions: 48966
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)