Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e02f
(615 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC007679-1|AAX93069.1| 922|Homo sapiens unknown protein. 31 3.2
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 31 4.3
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 31 4.3
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 31 4.3
Y13613-1|CAA73934.1| 436|Homo sapiens Prep-1 protein. 30 7.5
U68727-1|AAC51243.1| 435|Homo sapiens homeobox-containing prote... 30 7.5
BC007746-1|AAH07746.1| 436|Homo sapiens PBX/knotted 1 homeobox ... 30 7.5
BC000735-1|AAH00735.1| 336|Homo sapiens PKNOX1 protein protein. 30 7.5
AY566249-1|AAT70235.1| 218|Homo sapiens pkonx1c protein. 30 7.5
AY196965-1|AAO45825.1| 436|Homo sapiens homeobox-containing pro... 30 7.5
AY142115-1|AAN34940.1| 405|Homo sapiens PKNOX1B protein. 30 7.5
AP001748-1|BAA95533.1| 435|Homo sapiens homeobox-containing pro... 30 7.5
AK222892-1|BAD96612.1| 436|Homo sapiens PBX/knotted 1 homeobox ... 30 7.5
>AC007679-1|AAX93069.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -3
Query: 469 TVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLGIVGVDIQASTDNSSALHDDLVTVSRSS 290
T+ ++A S G+ ++ +SDRG+ G G GI + + +TD L+ +V + SS
Sbjct: 565 TIGVLAQSDGVPVQELSDRGI-GVFSTGTGASGIQSLSREVNTDLGELLNGRIVHDNFSS 623
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 367 VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 200
VG+D A D + L T+SR+ R+ +D + +VE I V+ I G YW
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983
Query: 199 -GFGALE 182
GF +E
Sbjct: 1984 QGFDVIE 1990
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 367 VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 200
VG+D A D + L T+SR+ R+ +D + +VE I V+ I G YW
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983
Query: 199 -GFGALE 182
GF +E
Sbjct: 1984 QGFDVIE 1990
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 367 VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 200
VG+D A D + L T+SR+ R+ +D + +VE I V+ I G YW
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983
Query: 199 -GFGALE 182
GF +E
Sbjct: 1984 QGFDVIE 1990
>Y13613-1|CAA73934.1| 436|Homo sapiens Prep-1 protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>U68727-1|AAC51243.1| 435|Homo sapiens homeobox-containing protein
protein.
Length = 435
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 22 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 68
>BC007746-1|AAH07746.1| 436|Homo sapiens PBX/knotted 1 homeobox 1
protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>BC000735-1|AAH00735.1| 336|Homo sapiens PKNOX1 protein protein.
Length = 336
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>AY566249-1|AAT70235.1| 218|Homo sapiens pkonx1c protein.
Length = 218
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>AY196965-1|AAO45825.1| 436|Homo sapiens homeobox-containing
protein PKNOX1 protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>AY142115-1|AAN34940.1| 405|Homo sapiens PKNOX1B protein.
Length = 405
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
>AP001748-1|BAA95533.1| 435|Homo sapiens homeobox-containing
protein protein.
Length = 435
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 22 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 68
>AK222892-1|BAD96612.1| 436|Homo sapiens PBX/knotted 1 homeobox 1
isoform 1 variant protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 QCNSEQDKNCGDPFKS--AKPPVECNTQDSINFNTLYLRNILPVEVL 277
+ +EQD NC +P + PPVE T ++ +Y + P+ L
Sbjct: 23 ELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLAL 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,836,536
Number of Sequences: 237096
Number of extensions: 1814474
Number of successful extensions: 3581
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3581
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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