Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e01r
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   6.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   6.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +2

Query: 647 MTLNIATAVAGSILSSLTGVFMCT*VCSSAQRLM 748
           M + I   +    +++ T +F+C  +C+  Q ++
Sbjct: 257 MIVYIIVVIFWYTVNASTNIFLCDEICNEGQTIL 290


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +2

Query: 647 MTLNIATAVAGSILSSLTGVFMCT*VCSSAQRLM 748
           M + I   +    +++ T +F+C  +C+  Q ++
Sbjct: 257 MIVYIIVVIFWYTVNASTNIFLCDEICNEGQTIL 290


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 369 LSPAGRDIELEIPKFEIR-SGLDLNIILPKVG 277
           +SP G  + L +PK+E   S +D    LP  G
Sbjct: 137 MSPPGNVLNLTMPKYEPNPSIIDPGPALPPAG 168


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 369 LSPAGRDIELEIPKFEIR-SGLDLNIILPKVG 277
           +SP G  + L +PK+E   S +D    LP  G
Sbjct: 137 MSPPGNVLNLTMPKYEPNPSIIDPGPALPPTG 168


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 351 DIELEIPKFEIRSGLDLNIILPKVGVSKIFQEPAPGIVKNDQVVVSRAFQEAFVK 187
           D EL++ +   R+  +L    PKV +       A G  K   +V  ++ ++AF++
Sbjct: 72  DPELDVDQNGFRNFTNLKKTHPKVKLQVAVGGWAEGGSKYSAMVAEKSRRDAFIR 126


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 229 VILNNARCWLLEYL*HP 279
           V  N  R WL ++L HP
Sbjct: 188 VATNILRAWLFQHLTHP 204


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 229 VILNNARCWLLEYL*HP 279
           V  N  R WL ++L HP
Sbjct: 344 VATNILRAWLFQHLTHP 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,744
Number of Sequences: 336
Number of extensions: 3456
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)