Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d24r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   2.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.6  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   8.7  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   8.7  

>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -2

Query: 138 RKYNMYVPVFFRLLKKT-RYFTPLV*SKRLSYFKLY-RKGQLS 16
           R+ +  VP++ RLLK T R++ P+     +S+F+ Y RK + S
Sbjct: 45  RQCSTLVPLYRRLLKATRRFWDPMASQILISHFQAYARKARKS 87


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 406 QMKLIRSLFFVYCLIVRLKSVYVFK 332
           Q+  +R  FF++C I+R+    VF+
Sbjct: 3   QLLFLRRFFFLFCFIIRISCTGVFE 27


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 623 KSRLVKILSYEILYFVNCLFS 561
           +S +  ++SY +LYFVN L S
Sbjct: 38  QSNVGAVISYAVLYFVNSLLS 58


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 337 KRKRISNEQSDSKRKTMSELISFGIEFFRRNHIHNLYCS 453
           KRK++S+++   K+K    ++    ++ +  H+H+++CS
Sbjct: 70  KRKKLSSKE---KKKLQLNVVPKIADYSQFKHLHSMWCS 105


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 FCRVKTPTRVFQVMHYYALKKNL 241
           F  V     VFQ ++YY LKKN+
Sbjct: 70  FVNVCKDASVFQNVYYYELKKNI 92


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 324 ISSILKE*TNSPLLIKHTNDGVQTI*YAK 238
           ++S+L +  +SPL+   T DGV ++ Y K
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVCYKK 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,708
Number of Sequences: 5004
Number of extensions: 64043
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)