Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d24r
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395...    28   6.9  

>03_05_0710 + 27038709-27038865,27039205-27039346,27039383-27039558,
            27039639-27039703,27040000-27040371,27040429-27040504,
            27040505-27040571,27040672-27040825,27041122-27041289,
            27041392-27041502,27041612-27041722,27041864-27041881,
            27041917-27042018,27042587-27042817,27043390-27043464,
            27043744-27043815,27044597-27044782,27044868-27045026,
            27045251-27045343,27045730-27045801,27046336-27046426,
            27046669-27046847,27047252-27047333,27047526-27047636,
            27047715-27047821,27048194-27048271,27048357-27048452,
            27048627-27048722,27048839-27048856
          Length = 1154

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 406  GIEFFRRNHIHNLYCST*RSYY*VLSRVAVVLCTKTHRWYACIKQKWRETDSLNKQFTKY 585
            GI+ F +  IH +     R    ++      LC + +  Y  I Q  +  DS+N+++ + 
Sbjct: 920  GIKAFVKKEIHEVRTVDERKASEIIQLTMPKLCVRLNSLYYGISQLSKLEDSINERWARR 979

Query: 586  KIS*LNI 606
            K   +NI
Sbjct: 980  KSESINI 986


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,723
Number of Sequences: 37544
Number of extensions: 304954
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)