Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d24r
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical p...    30   2.0  
AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical...    28   6.2  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 416 FSEEIIYITYIVVPSAATIKYYHGLQSFYVQKHIAGMHASNRNGARQTH*TNNSQNIKFR 595
           FS+E+IY   + +PS ++ +   G+    ++   AG+H   + G  + H   NS   K R
Sbjct: 335 FSDELIYPIKMEIPSTSSSERSIGIALSPIKLDFAGIHV-QKTGKIEKHIKMNSNEEKDR 393

Query: 596 NL 601
            L
Sbjct: 394 EL 395


>Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 416 FSEEIIYITYIVVPSAATIKYYHGLQSFYVQKHIAGMHASNRNGARQTH*TNNSQNIKFR 595
           FS+E+IY   + +PS ++ +   G+    ++   AG+H   + G  + H   NS   K R
Sbjct: 335 FSDELIYPIKMEIPSTSSSERSIGIALSPIKLDFAGIHV-QKTGKIEKHIKMNSNEEKDR 393

Query: 596 NL 601
            L
Sbjct: 394 EL 395


>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 479 YHGLQSFYVQKHIAGMHASNRNGARQTH*TNN 574
           +HGLQ    Q   AG HASN +G    +  NN
Sbjct: 256 FHGLQGPISQNVQAGTHASNEHGLNSPNGPNN 287


>AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.4 protein.
          Length = 267

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -3

Query: 662 IKYVLLFDFDIIYKSRLVKILSYEILYFVNCLFSESVSRHFCLMHAYQRCVFVHKTTATR 483
           IKY + F  DI+   +   I   E  Y +N  + E +  HF     Y     +   T  R
Sbjct: 141 IKYTVKFLMDILKAQKCAHIKKIEFSYSINSKYIEHLF-HFVSFQIYMSDFSIKTATQIR 199

Query: 482 DS 477
           D+
Sbjct: 200 DN 201


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +1

Query: 127 IIFTVMSVRKRYLNSLLPSKDADTCVSSYALLCT*KELSISNGLNTIIRMFYQ 285
           II + ++ RK +  +  PS+ +DT  ++ A+    + LSI N L+TII  F+Q
Sbjct: 159 IITSFLTDRKNWEPT--PSEKSDTSPTTEAM----RSLSIQNALSTIIPAFFQ 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,308,084
Number of Sequences: 27780
Number of extensions: 344989
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)