Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d24r
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 428 FLLKNSIPNEINSLIVFRLLSDCSF 354
           F  +++  N +N+ + F+L++DC F
Sbjct: 48  FYRQDTKNNLLNAYVRFKLVTDCIF 72


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 644 FDFDIIYKSRLVKILSY-EILYFVNCLFSESVSRHFCLMHA 525
           +DF +I  ++++K+ +      +   ++  S+SRH+ ++HA
Sbjct: 217 WDFKVIKATKVLKMYACCPNDTYPMIVYEFSISRHYGILHA 257


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 153 KKIFKQSSAE*RRRHVCFKLCIIMHL 230
           K +++ +S E  ++  CF+ C+   L
Sbjct: 38  KSMYEANSEEQMKKFGCFEACVFQKL 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,989
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)