Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d24f
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.72
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.72
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 28 1.3
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 2.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 3.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 6.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 6.7
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 25 8.8
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 8.8
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 8.8
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 104 SKQSTSERYSTESS-VDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPIF 271
S +S++ Y+T S+ +P+T + S T + T ++TE+P +S T+ PI+
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIY 1495
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 0.72
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 71 VVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 238
VV E S +R K ST++ +ST +PTTTA + S S T + + + S
Sbjct: 132 VVYEYHPSSERHK-STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTS 186
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 473 NTAATTNSTRTHSSCSATTDTGSI 544
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 104 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
S STS ST SS T+++ + S+ STA+ S +++ ++ S +S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
STS Y + SSV ++++ + S+ + + S++T+ +T S +S
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 466 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSXLY 603
L +YS + + +TF SN + + YR N P+ +S S S LY
Sbjct: 100 LIEYSGSAFMPMSTFTPQSNRKPTEAYRRNSPVKKSFSRPSHSLLY 145
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 473 NTAATTNSTRTHSSCSATTDTGSI 544
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 104 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 214
SK+ TSER +SSV P+ + S+ S K + T
Sbjct: 96 SKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 23 VTISAEIVCSFVLRI---LVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYST 193
VT+S+ + SF L S + + S+S YS SSV PT+ + S++++
Sbjct: 257 VTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSN-SSVIPTSVPSSV-SSFTS 314
Query: 194 ATKSITTAVAATTES 238
++ S TT + A+ S
Sbjct: 315 SSSSYTTTLTASNTS 329
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 74 VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 253
V S+ S + E +SSV +T+A + + + S T A T P
Sbjct: 821 VNPSLDSEPVQLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENT 880
Query: 254 TAEPI 268
+AEPI
Sbjct: 881 SAEPI 885
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 92 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES--PASFATAEP 265
S R++ +TS YS+ +V +T S+ STA+ I ++ ++ T S P +F+++
Sbjct: 907 SSSRNEGTTS--YSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSST 964
Query: 266 I 268
+
Sbjct: 965 L 965
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 123 SLVDCFDRFLDLTDSATTKILNTNEHTISALIVTQG 16
SLV+ + F+D+ A +++ NE IS I G
Sbjct: 400 SLVEHYPHFVDMLREALRELIGDNEKLISIGIAKDG 435
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 457 TKLLNQYSSNNKLYKNTFKLFSN 525
+KLL + S +LY++ +KLF N
Sbjct: 748 SKLLADHQSQVQLYQSCYKLFKN 770
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 475 YSSNNK---LYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSXLYSKQQ 615
+ SNNK +N ++ +NRYR YR + P HS Y K++
Sbjct: 202 FPSNNKDGGYRRNNYRDRDSNRYRNSYRPSRP-----QREHSPGNYRKER 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,444
Number of Sequences: 5004
Number of extensions: 13856
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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