Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d24f
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 34 0.10
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 31 0.56
06_01_0326 + 2372176-2373057,2373146-2373610 31 0.74
03_01_0185 - 1485023-1485733 30 1.7
01_06_0626 + 30701538-30701939 29 3.9
04_04_0887 + 29095087-29096166 28 5.2
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001 28 6.9
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 27 9.1
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107... 27 9.1
01_05_0760 - 24977608-24978708 27 9.1
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 95 RKRSKQSTSERYSTESSVDPTT-TAAGAKSNYSTATKSITTAVAATTESPASFATAEP 265
R+ +K+ST + S+ S AA A ++ S+ T + TTA ++ +PA+ A A+P
Sbjct: 144 RRNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADP 201
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 77 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFA 253
AE++++ + K++ ER T+ + AA A S ST T + VAA +P + A
Sbjct: 487 AEALEALELEKKTVEERRKTKEETAAVSGAADAASGVTSTVTPAAGAGVAAGAAAPGAGA 546
Query: 254 TA 259
TA
Sbjct: 547 TA 548
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -1
Query: 159 VVGSTDDSVEYRSLVDCFDRFLDLTDSATTKILNTNEHTISALIVTQGIRQSS 1
V+GS++ +++ S+ +C D +D+TD +T ++ + T ++ G R S
Sbjct: 252 VMGSSNIWIDHVSMSNCSDGLIDITDGSTAITISNSHFTKHDHVMLFGARDDS 304
>03_01_0185 - 1485023-1485733
Length = 236
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 262
S R S ++ P TT ++ +TAT + TT V T +P + A+
Sbjct: 35 SVVSRLSAAGNISPATTTPPTMTSSATATSAKTTRVTVPTPAPNTVHDAD 84
>01_06_0626 + 30701538-30701939
Length = 133
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSN--YSTATKSITTAVAATTESPASFA 253
K K + TS + + + P+ TA G ++ ++TAT S+ + T+ SP++ A
Sbjct: 52 KHEKPTTTCTSTNPMSTTVMPPSLTATGTDTSDHHATATASVFNGLGRTSSSPSNVA 108
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 476 TAATTNSTRTHSSCSATTDTGSIT 547
T AT RTH S SA+ TG++T
Sbjct: 44 TTATWRRARTHPSASASASTGTLT 67
>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
Length = 708
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 ILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTAT-KSITTAVAATT 232
+L+V + SR+R+ + + + P +TA+G +++T K I A AA T
Sbjct: 280 VLLVVCTAASRRRAANGEVGKTAAARGLTPPSTASGELGEVTSSTSKEIALAAAAAT 336
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +2
Query: 68 LVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
+++A+S K + SK ++S S+ + P ++ K+NY T ++ A ++ +S
Sbjct: 262 MLLAQS-KEAQASKHASSSTPSSRAPSAPQRSSFEQKTNYQTPASALYGAYEGSSSQGSS 320
Query: 248 FATAEP 265
EP
Sbjct: 321 SGYGEP 326
>08_01_0136 -
1077800-1077811,1077929-1078046,1079410-1079549,
1079627-1080313
Length = 318
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 476 TAATTNSTRTHSSCSATTDTGS 541
+A TT +T T SSCS+ TG+
Sbjct: 155 SATTTTTTTTSSSCSSAASTGA 176
>01_05_0760 - 24977608-24978708
Length = 366
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 89 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSIT 211
+ + RS STS R+ SS GA YS+++ ++T
Sbjct: 145 RRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSSSSTVT 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,075,852
Number of Sequences: 37544
Number of extensions: 78172
Number of successful extensions: 497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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