Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d24f
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 37 0.015
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 33 0.25
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92) 32 0.33
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 31 1.00
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 30 1.3
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 30 1.7
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_4659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_27550| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=3.6e-05) 29 3.0
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 29 4.0
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 29 4.0
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 29 4.0
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 4.0
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 5.3
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_53176| Best HMM Match : Homeobox (HMM E-Value=0) 28 5.3
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 28 5.3
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 5.3
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 28 5.3
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 28 7.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 27 9.3
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 119 SERYSTESSVDPTTTAAGAKSNYSTA----TKSITTAVAATTESPASFATAEPI 268
SE +TESS P T + KS+ +TA T +TT+ A T +PA+ TA I
Sbjct: 565 SEAATTESSTVPQTVVSETKSSTTTATITTTSEVTTSAAVLTVAPAATTTASAI 618
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 35.5 bits (78), Expect = 0.035
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 17 PCVTISAEIVCSFVLRILVVAES-VKSRKRSKQSTSERYSTESSVDPT-TTAAGAKSNYS 190
P + S+ I S +V + S V K +T+E+ +T ++ + T TT A + +
Sbjct: 193 PAQSASSVIQASSSTSAVVASSSAVIMTNAPKITTTEQLATTTAAETTPTTTTSASTTTA 252
Query: 191 TATKSITTAVA---ATTESPASFATAE 262
T TK+ TT+V+ ATT+ S TAE
Sbjct: 253 TTTKATTTSVSTTTATTKEEESTTTAE 279
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAG-AKSNYSTATK 202
TI+A + S + A + ++++T+ +T + V TTTAA S S TK
Sbjct: 1123 TIAAAVTASTASVVTTTATVAAATTTAEKATT---TTAAMVKATTTAAAVTASTASVVTK 1179
Query: 203 SITTAVAATTESPASFATA 259
+ T A A TT A+ TA
Sbjct: 1180 TATVAAATTTAEKATTLTA 1198
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 134 TESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 265
T ++ P TT A + TK TT + ATT++P + P
Sbjct: 6106 TSTTEPPVTTPTTAPTTTPPTTKQTTTQLPATTKAPTATKPTTP 6149
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 83 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 262
S + K + S++ +++ +TT A + ST + +TAV ATT SPA+ TA
Sbjct: 463 STSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTKATTSTAVEATT-SPAATETAP 521
Query: 263 P 265
P
Sbjct: 522 P 522
>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
Length = 425
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +2
Query: 14 IPCVTISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYST 193
+ T +AE+ + V + + + + +E T ++ + TTT A A +T
Sbjct: 303 VTTTTTAAEVTMT-TTAAEVTTTTTATEVTTTTTAAEVTMTTTAAEVTTTTAAAAEATTT 361
Query: 194 ATKSITTAVAATTESPASFATA 259
A ++ TTA ATT + + TA
Sbjct: 362 AAEATTTAAEATTTAAEATTTA 383
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/148 (16%), Positives = 37/148 (25%), Gaps = 3/148 (2%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAA---TTESPASFATAEPIFXXXX 283
+ +E T ++ + TTT A+ +T +TT A TT + A+ T
Sbjct: 13 TATEVTMTTTAKEVTTTTTAAEVTMTTTAAEVTTTTTATEVTTTTTAAEVTMTTTAAEVT 72
Query: 284 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXXX 463
Sbjct: 73 MTTTATEATMTTTAAEVTTTTTAAKVTTTTTAAEVTMTTTAKEVTMTTTAAEVPSTTTAA 132
Query: 464 XXINTAATTNSTRTHSSCSATTDTGSIT 547
TAA T T T ++ ATT +T
Sbjct: 133 EATTTAAATEVTTTTTAAEATTTATEVT 160
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 131 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 259
+T ++ + TTTAA A + TA ++ TTA ATT + + TA
Sbjct: 358 ATTTAAEATTTAAEATT---TAAEATTTAAEATTTAAEATTTA 397
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 104 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 268
++ +T+ +T ++ + TTTAA A + TA ++ TTA ATT + + + + I
Sbjct: 356 AEATTTAAEATTTAAEATTTAAEATT---TAAEATTTAAEATTTAAEATTSYQSI 407
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 104 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 238
S +S+++ YS + TTT A + + T SITTA A TT S
Sbjct: 478 SCKSSNDYYSVSNKATTTTTKLTALTTITHMTVSITTARATTTSS 522
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 113 STSERYST---ESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
ST E ST S+V PT+T + T+T TT +A TTESP S
Sbjct: 165 STVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTTMMAPTTESPTS 212
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 30.7 bits (66), Expect = 1.00
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 205
T + + + + A + + + +T+ + ++V T TAA + + TAT +
Sbjct: 682 TATVTVTATATVTATATATATATATATAATTTATATATATVTATVTAAASATAAVTATVT 741
Query: 206 ITTAVAAT-TESPASFATA 259
+T V AT T + A+ ATA
Sbjct: 742 VTVTVTATVTVTAATAATA 760
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 205
T++ + + L + V + + + + +T ++ TTTA + +TAT +
Sbjct: 290 TVTVIVTVTATLAVTVTVTETAAAATATVTATVTTTTTATATATTTATATATTTATATAT 349
Query: 206 IT-TAVAATTESPASFATA 259
T TA A T + + ATA
Sbjct: 350 ATATATATATVTATATATA 368
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 205
T++ + + + V A + ++ + + + ++V TTTA + +TAT +
Sbjct: 282 TVTVTATATVTVIVTVTATLAVTVTVTETAAAATATVTATVTTTTTATATATTTATAT-A 340
Query: 206 ITTAVAATTESPASFATA 259
TTA A T + + ATA
Sbjct: 341 TTTATATATATATATATA 358
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 131 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 262
+ E+++ P TTAA + T T TTA TT +P + A AE
Sbjct: 1250 AAETTMAPETTAAETTAATVTTTTLETTAALETTMAPETTAAAE 1293
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 131 STESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFATAE 262
S E++V P TTAA + T + TTA A TTE+ A AT +
Sbjct: 2057 SAETTVAPETTAAPDTTLVPDTTVAAETTAAAETTETTAVPATTD 2101
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTAT--KSITTAVAATTESPASFAT 256
ST+ TE+S+ T + A + ST K+ITT TTE P S +T
Sbjct: 3103 STTISPKTETSITETPETSPATISISTEKTGKAITTPQGTTTELPPSPST 3152
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 80 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
E+ K R + ++T+ + +T + P S+ + T++ TTA ATT++P +
Sbjct: 1808 ETTKPRTTTPKTTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAPGA 1863
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/160 (16%), Positives = 45/160 (28%)
Frame = +2
Query: 56 VLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTE 235
V++ V E+ R+ + T +T ++ TTAA + + ++TTA A T
Sbjct: 532 VMQSTVTKENRTDREDLETKTLSGATTAAAT--VTTAAATVTTAAATVTTVTTAAATVTT 589
Query: 236 SPASFATAEPIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXX 415
+ AT +
Sbjct: 590 VTTAAATVTTV-TTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLT 648
Query: 416 XXXXXXXXXXXXXXXXXXINTAATTNSTRTHSSCSATTDT 535
+ TAA T +T T ++ + TT T
Sbjct: 649 TVTTAAATLTTAAATVTTVTTAAATLTTVTTAAATLTTVT 688
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 256
+T+ +T ++ TTT A + +TAT + TT TT + + T
Sbjct: 5 TTTTTTTTTTTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTT 52
>SB_4659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 475 YSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRH 588
Y+ KLY N F R+ G+L Y C N+H
Sbjct: 103 YTVRTKLYNNVVSNFEAGEVREPIGGHLADYVDCPNKH 140
>SB_27550| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=3.6e-05)
Length = 136
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 165 AVVVGSTDDSVEYRSLVDCFDRFLDLT-DSATTKILNTNEHTISALIVTQGIRQ 7
A VVG + DSV + ++ CFD+ L+ + D + +T + + +I T G RQ
Sbjct: 37 ASVVGKSPDSVYHVCVMPCFDKKLEASRDDFYNDMYSTRD--VDCVISTGGTRQ 88
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 110 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
++T+ +T ++ TTTAA S + ++ TTA A TT + A+
Sbjct: 335 EATTTATATTTTAAITTTAATTTSEAAATAEATTTATATTTVTAAT 380
Score = 28.3 bits (60), Expect = 5.3
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Frame = +2
Query: 17 PCVTISAEIVCSFVLRI-----LVVAESVKSRKRSKQSTSERYSTESSVDPTTT--AAGA 175
PC T S E+ + + + A + + +T+E +T ++ TT AA
Sbjct: 274 PCSTNSTELPATHTVTTPSPPAAIRATTTTATTTEAAATAEATTTATATTTATTTEAAAT 333
Query: 176 KSNYSTATKSITTA----VAATTESPASFATAE 262
+TAT + TTA AATT S A+ ATAE
Sbjct: 334 AEATTTATATTTTAAITTTAATTTSEAA-ATAE 365
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 140 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 265
+++ P+TT + STA TTA ATT++ A + T +P
Sbjct: 288 TTIKPSTTEESTTNEASTAEFESTTAAQATTKTEA-YTTKKP 328
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 205
T +A I + + + + + +T+ +T ++ TTTA + T +
Sbjct: 26 TTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITITTVT 85
Query: 206 ITTAVAATTES 238
ITTAVA T S
Sbjct: 86 ITTAVANKTVS 96
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +2
Query: 26 TISAEIVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 205
T +A I + + + + + +T+ +T ++ TTTA + T +
Sbjct: 148 TTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITITTVT 207
Query: 206 ITTAVAATTES 238
ITTAVA T S
Sbjct: 208 ITTAVANKTVS 218
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 140 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
SSV PT+ A S+ +T T A TTE+PA+
Sbjct: 841 SSVKPTSNPATVLSDGTTENPETTEASKTTTEAPAT 876
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 131 STESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFATAE 262
S E++V P TTAA + T + TTA A TTE+ A AT +
Sbjct: 244 SAETTVAPETTAAPDTTLVPDTTVAAETTAAAETTETTAVPATTD 288
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 92 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 265
S++ S Q TS T +S TTT+ +++ S + + + T+ P+S + +P
Sbjct: 680 SKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSPSQQTTSPPPSSPSIGQP 737
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 80 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 247
E+ R + ++T+ + +T + P S+ + T++ TTA ATT++P +
Sbjct: 207 ETTTPRTTTPETTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAPGA 262
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 71 VVAESVKSRKRSKQSTSERYSTESSV--DPTTTAAGAKSNYSTATKSITTAVAATTESPA 244
V+ S++S + STS S ESS+ + TT+ S++ S TT+V ++
Sbjct: 936 VLTSSMESSSMATTSTSSTPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSMESF 995
Query: 245 SFAT 256
S AT
Sbjct: 996 SMAT 999
>SB_53176| Best HMM Match : Homeobox (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 134 TESSVDPTTTAAGAKSNYSTATKSITTA 217
T S DP T AAGA S+ +T T+ TA
Sbjct: 43 TSKSGDPATLAAGAGSSEATRTRRYRTA 70
>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 253
++S + T S TT+ A A S+Y+ AT S ++ + +SFA
Sbjct: 72 TSSHAHVTSSYTHVTTSYAHATSSYAHATSSFAHVTSSYAHATSSFA 118
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 253
+TS ++T S T++ A S+Y+ AT S ++ + +SFA
Sbjct: 86 TTSYAHATSSYAHATSSFAHVTSSYAHATSSFAHVTSSYAHATSSFA 132
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 265
+T+ T + PTT A + + AT A AA PA+ A A P
Sbjct: 129 ATTPTTPTTAPTTPTTPTTAATTPTTAATTPAAGAAAAAAPPPAAAAAAPP 179
>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 473 NTAATTNSTRTHSSCSATTDTGSITE 550
NTA ++N+ R H++C T T S T+
Sbjct: 16 NTATSSNTKRQHATCRTNTATSSNTK 41
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 92 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSIT-TAVAATTESPASFATAEPI 268
S S +++ ++ S+V TTT + +TAT + T TA A T + + AT I
Sbjct: 406 SNSNSNSNSNSNSNSNSTVTATTTTTVTVTTTATATATATATATATATVTTTATATVTVI 465
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 92 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 259
S S + + +T +V T TA + +TAT ++TT AT A+ ATA
Sbjct: 416 SNSNSNSTVTATTTTTVTVTTTATATATATATATATATVTTTATATVTVIAT-ATA 470
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/149 (14%), Positives = 39/149 (26%)
Frame = +2
Query: 101 RSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPIFXXX 280
R+ + + + ++ TAA A + +TAT + T A T + + AT
Sbjct: 106 RTAATATAAAAATAAASVAATAAAAATAAATATATTTATAATATAAATATATGTTTATAT 165
Query: 281 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXX 460
Sbjct: 166 VTATATATVTAAATATATATATATATTTSTATVTATATVTVTATAATTVTATVTAATTVT 225
Query: 461 XXXINTAATTNSTRTHSSCSATTDTGSIT 547
TAATT + ++ +AT T ++T
Sbjct: 226 VTVTATAATTVTVTVTATVTATV-TATVT 253
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 113 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATT 232
+++ Y+T +S PTT+ S ST + + TT+ +TT
Sbjct: 75 TSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTT 114
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 131 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTE 235
+T S++ TTT +T T TT A TTE
Sbjct: 56 TTTSTITTTTTTTTTTKTTTTTTTKTTTTTATTTE 90
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 140 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPI 268
+S TT+ G + T TTA TTE+P AS TAE I
Sbjct: 964 TSTPETTSTPGTLAASETTAAPETTAKPETTETPAASVVTAEVI 1007
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +2
Query: 86 VKSRKRSKQSTSERYSTESSV----DPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 253
VK + +TS +++SSV +P T SN A SI + + E +A
Sbjct: 480 VKKKAEVVVATSSTGTSDSSVKVEAEPVMTYKEETSNTLAALMSIDVPLVSKAEPSTGYA 539
Query: 254 TAEPI 268
T EP+
Sbjct: 540 TPEPV 544
>SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 110 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPIF 271
+ST+ ST T A K+ T+ K T + TTE+ ATAE F
Sbjct: 25 ESTTNEASTAEFESTTAAQATTKTKEYTSIKPSNTEGSTTTEAYIHSATAEFTF 78
>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 125 RYSTESSVDPTTTAAGAKSNYSTATK 202
RY+T S+ TTT + Y+T TK
Sbjct: 3 RYNTNKSITKTTTQPSPNNTYTTITK 28
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 137 ESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 262
E++V P TTAA T +TT V TT +PA+ A E
Sbjct: 2211 ETTVAPETTAA-----LETTAAPVTTMVPETTAAPATTAALE 2247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,499,455
Number of Sequences: 59808
Number of extensions: 103622
Number of successful extensions: 1106
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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