Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d24f
(621 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 33 0.81
BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein. 33 0.81
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 33 0.81
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 33 0.81
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 33 0.81
AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein pro... 33 0.81
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 33 0.81
BC105737-1|AAI05738.1| 566|Homo sapiens chromosome 6 open readi... 30 7.6
BC105735-1|AAI05736.1| 566|Homo sapiens chromosome 6 open readi... 30 7.6
AL669830-8|CAI18008.1| 566|Homo sapiens chromosome 6 open readi... 30 7.6
AL663093-1|CAI17705.1| 566|Homo sapiens chromosome 6 open readi... 30 7.6
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein.
Length = 311
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 147 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 204
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 208 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 265
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 33 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 90
>AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein
protein.
Length = 229
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 47 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 104
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.1 bits (72), Expect = 0.81
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 247
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 291 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 348
>BC105737-1|AAI05738.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 29.9 bits (64), Expect = 7.6
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Frame = +2
Query: 77 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY--STATKSITTAVAATTESPASF 250
A + + + S S+ +T S T++ AG +N ST + I+T + + +P+S
Sbjct: 237 ASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSG 296
Query: 251 ATAEPIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXX 430
A
Sbjct: 297 ANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSG 356
Query: 431 XXXXXXXXXXXXXINTAATTNSTRTHSSCSATTDTGS 541
T+ TNS + S A+T T S
Sbjct: 357 ASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTS 393
>BC105735-1|AAI05736.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 29.9 bits (64), Expect = 7.6
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Frame = +2
Query: 77 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY--STATKSITTAVAATTESPASF 250
A + + + S S+ +T S T++ AG +N ST + I+T + + +P+S
Sbjct: 237 ASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSG 296
Query: 251 ATAEPIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXX 430
A
Sbjct: 297 ANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSG 356
Query: 431 XXXXXXXXXXXXXINTAATTNSTRTHSSCSATTDTGS 541
T+ TNS + S A+T T S
Sbjct: 357 ASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTS 393
>AL669830-8|CAI18008.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 29.9 bits (64), Expect = 7.6
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Frame = +2
Query: 77 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY--STATKSITTAVAATTESPASF 250
A + + + S S+ +T S T++ AG +N ST + I+T + + +P+S
Sbjct: 237 ASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSG 296
Query: 251 ATAEPIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXX 430
A
Sbjct: 297 ANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSG 356
Query: 431 XXXXXXXXXXXXXINTAATTNSTRTHSSCSATTDTGS 541
T+ TNS + S A+T T S
Sbjct: 357 ASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTS 393
>AL663093-1|CAI17705.1| 566|Homo sapiens chromosome 6 open reading
frame 205 protein.
Length = 566
Score = 29.9 bits (64), Expect = 7.6
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Frame = +2
Query: 77 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY--STATKSITTAVAATTESPASF 250
A + + + S S+ +T S T++ AG +N ST + I+T + + +P+S
Sbjct: 237 ASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSG 296
Query: 251 ATAEPIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFXXXXXXXXXXXXXX 430
A
Sbjct: 297 ANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSG 356
Query: 431 XXXXXXXXXXXXXINTAATTNSTRTHSSCSATTDTGS 541
T+ TNS + S A+T T S
Sbjct: 357 ASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTS 393
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,142,637
Number of Sequences: 237096
Number of extensions: 385327
Number of successful extensions: 1693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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