Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d21r
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...   145   7e-36
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   4.9  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   6.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.6  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score =  145 bits (351), Expect = 7e-36
 Identities = 73/180 (40%), Positives = 106/180 (58%)
 Frame = -3

Query: 682 LKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRGTK 503
           L   K   + K KL +S+  G TI++++S L    RVIR+MPNT + ++E  +    G  
Sbjct: 94  LNSPKMKEALKGKLILSILAGKTISSLQSMLDESTRVIRIMPNTASRIRESMSVICPGPN 153

Query: 502 ATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPRD 323
           AT ED +    +F  +G   ++PE  +DA TA+ GSGPA+V  +IE++ DGGV  G+P  
Sbjct: 154 ATEEDIKFAEWVFNGIGRSMKLPEKLIDAATAVCGSGPAFVATMIEAMTDGGVMMGIPFP 213

Query: 322 LALRLAAQTTLGSAAMVKTGDHPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAIIGAVSAA 143
            A  LAAQT +G+  MV  G HPAM++++V++PAG T  G   LE    RS I   +  A
Sbjct: 214 QAQELAAQTMVGTGRMVLQGQHPAMIRNDVSTPAGCTISGLLALEDGKIRSTIARGIEQA 273


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 517 SRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSG 392
           +R  K T E   L++ L    G C E  E  ++A T +SG G
Sbjct: 264 ARACKDTLEKYALSAILSNTRGVCTEAFENVVEANTLMSGLG 305


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 277 MVKTGDHPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAIIGAVSAAVD 137
           ++  G HP        +  G  ++G + LE    R AI+GA   AV+
Sbjct: 146 LIAVGGHPIWPSHIPGAEYGIDSDGFFELESQPKRVAIVGAGYIAVE 192


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 112 IVFLQSYIYLLP-QTLHRLWQNGNRFSPSD 198
           I+  QS+ ++   Q L ++W N NRFSP +
Sbjct: 673 ILEFQSFSHISRIQFLTKIWDNLNRFSPKE 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,586
Number of Sequences: 5004
Number of extensions: 65957
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)