Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d21r
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118... 139 2e-33
09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337 30 2.2
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 29 2.9
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708... 29 3.9
07_01_0305 - 2181727-2184793,2185635-2185945 29 5.1
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 28 6.8
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 28 6.8
05_07_0138 + 27962864-27963184,27963297-27963431,27963959-279640... 28 6.8
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 28 6.8
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 28 6.8
>01_07_0174 -
41711220-41711408,41711483-41711669,41711690-41711810,
41712194-41712266,41712494-41712585,41712900-41712948,
41713189-41713413
Length = 311
Score = 139 bits (337), Expect = 2e-33
Identities = 93/213 (43%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Frame = -3
Query: 682 LKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRGTK 503
L E+K L S + KL +S+A GI + ++ R IRVMPNTP+ V + A+ G
Sbjct: 96 LVELKPLLS-EEKLLVSIAAGIKMEDLQG-WSGHRRFIRVMPNTPSAVGQAASVMCLGEM 153
Query: 502 ATAEDAQLTSQLFKA---VGTCDEV-----------------PEYQM-------DAITAL 404
AT D LF A V T +E +Y M +
Sbjct: 154 ATENDENRVRSLFSAIGKVWTAEEKYFDAVTGLRSFLEKLHWKQYVMILRINMYSHLFEY 213
Query: 403 SGSGPAYVYMLIESLADGGVRCGLPRDLALRLAAQTTLGSAAMV-KTGDHPAMLKDNVTS 227
SGSGPAY+++ IE++ADGGV GLPRDLAL LA+QT LG+A MV KTG HP LKD VTS
Sbjct: 214 SGSGPAYIFLAIEAMADGGVAAGLPRDLALGLASQTVLGAATMVNKTGKHPGQLKDMVTS 273
Query: 226 PAGSTAEGTYHLEKNGFRSAIIGAVSAAVDRCK 128
PAG+T G LEK FR +I AV AA RC+
Sbjct: 274 PAGTTITGIQELEKGAFRGTLINAVVAATKRCR 306
>09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337
Length = 526
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -3
Query: 586 SEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITA 407
+E V+ +P++ G F+R + A A + L + G VP YQ D
Sbjct: 116 AEVPVVSFSATSPSVSPGGGRFFARAALSDAAQAGAIAALARLFGWRRVVPVYQDD---- 171
Query: 406 LSGSGPAYVYMLIESL-ADGG---VRCGLP 329
G A+V L+++L A+G RC LP
Sbjct: 172 --DYGAAFVPFLVDALTAEGSEVPYRCALP 199
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 541 VKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCD--EVPEYQMDAITALSGSGPAYVYMLI 368
+K GAA GT + ++ + + ++ VG D EV + G GP V ML+
Sbjct: 222 IKPGAAVIDVGTNSISDPTRKSG--YRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLL 279
Query: 367 ESLADGGVR 341
++ DG R
Sbjct: 280 KNTVDGAKR 288
>10_08_0905 -
21469688-21469933,21470175-21470499,21470586-21470833,
21471061-21471315
Length = 357
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 589 PSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDE 440
PS++R +R P +PA ++ A+S TK+ A L + KAVG E
Sbjct: 151 PSDSRDLRFWPTSPASFRQSIDAYSSETKSLA--LCLFEFMAKAVGAKPE 198
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = -3
Query: 448 CDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPR------DLALRLAAQTTLG 287
C+ P+ M TA S L+ESL G+RCGLPR LA T LG
Sbjct: 896 CENFPDMNMAEPTAFSYP------KLLESLNICGIRCGLPRWIKELSRLAKLTLCDTHLG 949
Query: 286 SAAMVKTGDHPAM 248
M G+ A+
Sbjct: 950 EQDMAVVGNLKAL 962
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 589 PSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDE 440
PS++R +R P +PA + A+S TK+ A L + KAVG E
Sbjct: 149 PSDSRDLRFWPTSPASFRRSLDAYSSETKSLA--LCLFEFMAKAVGAKPE 196
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 536 FH*RRSVWHYTNHTSLRRQIRFDCSDSNSHG 628
F RRS +HY +T + + + F CS S G
Sbjct: 89 FSIRRSSYHYMGNTKIIKNMTFCCSRQGSRG 119
>05_07_0138 +
27962864-27963184,27963297-27963431,27963959-27964069,
27964622-27964903,27965246-27965445,27965595-27965826,
27965855-27965875
Length = 433
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 304 AQTTLGSAAMVKTGDHPAMLKDNVTS 227
A+ +GSA +VK GD P M +D + S
Sbjct: 153 ARQIVGSAILVKVGDRPKMEEDEIYS 178
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 536 FH*RRSVWHYTNHTSLRRQIRFDCSDSNSHG 628
F RRS +HY +T + + + F CS S G
Sbjct: 64 FSIRRSSYHYIGNTKIIKNMTFCCSRQGSRG 94
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -3
Query: 565 VMPNTPALVKEGAAAFSRGTKATAEDAQLTSQL-FKAVGTCDEVPEYQMDAITALSGSGP 389
V P + A V +++ R A+A + ++ + + D PE + A + + GS P
Sbjct: 70 VDPPSYADVAASSSSSPRSASASASASPRSAASDYALIAVSDPTPEAEPAATSLVPGSAP 129
Query: 388 AYVYMLIESLADGGVR 341
Y+ L+ S G R
Sbjct: 130 TYISYLVTSARRGDHR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,133,888
Number of Sequences: 37544
Number of extensions: 479384
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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