Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d21r
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...   193   1e-49
U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...   116   2e-26
Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    28   8.0  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    28   8.0  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score =  193 bits (471), Expect = 1e-49
 Identities = 93/177 (52%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
 Frame = -3

Query: 655 AKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLT 476
           +K  L +S+A+GITI  +ES LP+++RV+RVMPNTP++V+ GA+AF+ G+     DA+  
Sbjct: 87  SKEHLVVSIALGITIRNIESLLPTKSRVVRVMPNTPSVVRAGASAFAMGSACRDGDAETV 146

Query: 475 SQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPRDLALRLAAQT 296
            +L   VG   EVPE  +D +T LSGSGP+Y++ +IE LADGGV+ GLPRDLAL+LAA T
Sbjct: 147 EKLLSTVGFAVEVPEIHIDPVTGLSGSGPSYMFAVIEGLADGGVKVGLPRDLALKLAAYT 206

Query: 295 TLGSAAMV-KTGDHPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAIIGAVSAAVDRCK 128
            LG+A MV +TG HPA LKD+V SPAGS+  G + LE  G +  ++ AV AA +R +
Sbjct: 207 LLGAAKMVLETGIHPAQLKDDVQSPAGSSVYGMHKLESGGLKGVLMDAVEAATNRSR 263


>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score =  116 bits (278), Expect = 2e-26
 Identities = 73/198 (36%), Positives = 107/198 (54%), Gaps = 15/198 (7%)
 Frame = -3

Query: 658 SAKNKLFISVAMGITIATVESNLP---SEARVIRVMPNTPALVKEGAAA--FSRGTKATA 494
           +++ +  ISV  G+ +  + + LP       ++R+MPN  + +  GA+   + +  K   
Sbjct: 100 NSRPEFIISVMAGVPLKVLNAKLPFVSGNTTIVRLMPNVASSIGAGASTMCYEKNEKIMN 159

Query: 493 EDA--QLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPRDL 320
           +D+  +L  +  + VGT + +PE   +   A+ GS PA+ +M IESLADG V  GL R  
Sbjct: 160 QDSHIELAREFAECVGTVELIPERCFNPAMAIGGSSPAWTFMYIESLADGAVAQGLGRAE 219

Query: 319 ALRLAAQTTLGSAAMVKTGD--------HPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAI 164
           A RLAAQ  LG+A MV   +        H   LKD V SP G+T EG   LEKNGFR A+
Sbjct: 220 AKRLAAQAVLGAAQMVLNSNSGFDIETQHFGSLKDMVCSPGGTTIEGVRALEKNGFRYAV 279

Query: 163 IGAVSAAVDRCKIVKKQL 110
           + AV AA  +   + K L
Sbjct: 280 MEAVVAASTKADEMAKSL 297


>Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical
           protein ZC334.11 protein.
          Length = 83

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 92  LCGLIVQLFFYNLTSIYCRRHCTDYGRTETVFLQVICSLSGRPCGTGDIVFQH 250
           LC L++    +   S   +R C   GR    ++  IC   G PC  GDI+ +H
Sbjct: 9   LCALVLTTMAFLAPSTAAKRRC---GRRLIPYVYSIC---GGPCENGDIIIEH 55


>Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical
           protein T16H12.4 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -3

Query: 415 ITALSGSGPAYVYMLIESLADGGVRC---GLPRDL-ALRLAAQTTLGSAAMVKTGDHPAM 248
           I+ALS   P  +Y  IE++    +RC   GL  ++   +  A+ T G  ++    DH  +
Sbjct: 175 ISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQL 234

Query: 247 LKDNVTSPAGSTAEGTYHLEKNGF 176
           L    T P  S      +    GF
Sbjct: 235 LFSKHTLPPSSAKSSECNAIHVGF 258


>U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical
           protein F22F4.5 protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 390 GPLPLRAVIASIWYSGTSSQVP-TALKSCD 476
           GP P+R ++  I Y  T+ QVP T  K CD
Sbjct: 41  GPHPIRTMVDGIDYCATAIQVPITTQKKCD 70


>Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical
           protein B0491.5 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 685 ALKEIKNLPSAKNKLFISVAMGITIATVESNL 590
           A   I++     N  F SVA+G T+AT++SN+
Sbjct: 235 AASSIRHKDDVHNHWFASVAVGSTVATMKSNV 266


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 235 HCLSTWLDDHQF*PWLRNPGWFGRPGEVRG 324
           HCL +W    Q  P  R   W GR G   G
Sbjct: 317 HCLRSWFQRQQTCPTCRTDIWQGRNGAAAG 346


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 502  ATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGG 347
            A  ++ QL++ LFKA    DE+ EY +D+    + S    V  L + L +GG
Sbjct: 1483 AQRDNRQLSTDLFKAKTANDELAEY-LDSTRRENKSLAQEVKDLTDQLGEGG 1533


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 502  ATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGG 347
            A  ++ QL++ LFKA    DE+ EY +D+    + S    V  L + L +GG
Sbjct: 1483 AQRDNRQLSTDLFKAKTANDELAEY-LDSTRRENKSLAQEVKDLTDQLGEGG 1533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,995
Number of Sequences: 27780
Number of extensions: 392607
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)