Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d21f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    44   2e-05
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   2.1  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    25   6.5  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   8.7  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +3

Query: 429 LKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRG 602
           L   K   + K KL +S+  G TI++++S L    RVIR+MPNT + ++E  +    G
Sbjct: 94  LNSPKMKEALKGKLILSILAGKTISSLQSMLDESTRVIRIMPNTASRIRESMSVICPG 151


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 383 RPLHHGYIFK*RCSSQAL-KSFGAGNIGRMTASCDFVGFCQTR 258
           RPL  G I K     +AL  + G+G I   T SC  V F QTR
Sbjct: 186 RPL--GLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTR 226


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 533 SLRRQIRFDCSDSNSHGNGNEEFILRRRQVFYLFKSGYHDIGLDRY-YHHFRPLHHGYIF 357
           S + Q  F+  D N H N +EE   RR   +    + Y+D+  D Y Y   +  H    +
Sbjct: 42  SRKLQEYFEFWDRN-HENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFY 100

Query: 356 K*RCSSQAL 330
           K    +Q++
Sbjct: 101 KGEAFAQSI 109


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 536 TSLRRQIRFDCSDSNSHGNGNEEF 465
           TSL+  I  D +DS S   GNEEF
Sbjct: 223 TSLKPDIIKDFTDSPSKVGGNEEF 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,947
Number of Sequences: 5004
Number of extensions: 45726
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)