Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d21f
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...    60   1e-09
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943...    28   5.0  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    28   5.0  
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976...    28   6.7  
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    27   8.8  
08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124     27   8.8  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 43/138 (31%), Positives = 63/138 (45%)
 Frame = +3

Query: 189 EAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPSDVASAKAFQGLGATALFENXX 368
           E  ++GFIG G LA ++A G  ++G+     I  + H      A+AF  +GA  L  N  
Sbjct: 17  EVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRP-ERAEAFSSIGAHILETNAQ 75

Query: 369 XXXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRV 548
                               L E+K L S + KL +S+A GI +  ++       R IRV
Sbjct: 76  VVDDSDVIVISVKPQIVRQVLVELKPLLS-EEKLLVSIAAGIKMEDLQG-WSGHRRFIRV 133

Query: 549 MPNTPALVKEGAAAFSRG 602
           MPNTP+ V + A+    G
Sbjct: 134 MPNTPSAVGQAASVMCLG 151


>08_01_0950 -
           9428506-9428693,9429223-9429595,9430127-9430572,
           9430654-9430785,9431129-9431236,9431428-9431533
          Length = 450

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 575 FH*RRSVWHYTNHTSLRRQIRFDCSDSNSHG 483
           F  RRS +HY  +T + + + F CS   S G
Sbjct: 89  FSIRRSSYHYMGNTKIIKNMTFCCSRQGSRG 119


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 575 FH*RRSVWHYTNHTSLRRQIRFDCSDSNSHG 483
           F  RRS +HY  +T + + + F CS   S G
Sbjct: 64  FSIRRSSYHYIGNTKIIKNMTFCCSRQGSRG 94


>12_01_0969 -
           9765114-9765664,9767963-9768512,9769507-9769561,
           9769918-9769980,9770547-9771325
          Length = 665

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 265 RPAEIKPFAKANASLPPPINPIFIASINGNFSMFKLH 155
           RP  ++P+A + AS PPP  P   A ++  F   + H
Sbjct: 23  RPPPVRPYASSAASPPPPPPPPASAYVHLPFCRKRCH 59


>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 280 SSGFARPAEIKPFAKANASLPPPINPI 200
           +S   RP  + P+    A  PPP+NP+
Sbjct: 363 ASSIPRPERVSPWQIEPAVSPPPVNPL 389


>08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124
          Length = 429

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 171 LKLPLIEAMKIGFIGGGRLAFALA 242
           + LPL+E  ++ F+G G  + ALA
Sbjct: 200 MTLPLVERCRLDFVGSGNCSLALA 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,089
Number of Sequences: 37544
Number of extensions: 328540
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)