Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d21f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      78   6e-15
SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)               77   1e-14
SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)               57   1e-08
SB_23255| Best HMM Match : Herpes_UL3 (HMM E-Value=0.93)               29   2.2  

>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 49/139 (35%), Positives = 72/139 (51%)
 Frame = +3

Query: 192 AMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPSDVASAKAFQGLGATALFENXXX 371
           ++ +GFIGGG +A ALA GFIS+ + K + I AS       +   ++ +G     +N   
Sbjct: 356 SLHVGFIGGGNMAIALAKGFISSKMVKSENIIASALTE--RTLTHWKEIGCKTTLKNSDV 413

Query: 372 XXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVM 551
                              +KEI  L + ++ L +SVA GI +++   +   E RVIR+M
Sbjct: 414 VAHSAVLFIAVKPHLVPTVMKEIDKLITERH-LVVSVAAGIPLSSFSKHYGLE-RVIRLM 471

Query: 552 PNTPALVKEGAAAFSRGTK 608
           PN P  VK+GAAAFS G K
Sbjct: 472 PNLPCSVKQGAAAFSCGEK 490


>SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 46/142 (32%), Positives = 74/142 (52%)
 Frame = +3

Query: 177 LPLIEAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPSDVASAKAFQGLGATALF 356
           + LI +M  GFIG G+ A A+A GF+SAG+ K  +I AS  P D +  + F+ LG T   
Sbjct: 1   MSLISSM--GFIGAGKAATAMAKGFLSAGVIKASDIIASA-PRD-SDLRNFRALGCTVTS 56

Query: 357 ENXXXXXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEAR 536
           +N                      ++EI  + + ++ +  S+A G+T+  ++ +LP   R
Sbjct: 57  DNKKVIKEAKTIFLATKAKAFPQVMQEISPVVT-RDHIVSSIAAGVTLEWLQKSLPGRTR 115

Query: 537 VIRVMPNTPALVKEGAAAFSRG 602
           +IR+M NTP   +EG  A + G
Sbjct: 116 LIRMMLNTPVQFREGVTAMTFG 137


>SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)
          Length = 630

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/99 (32%), Positives = 51/99 (51%)
 Frame = +3

Query: 306 DVASAKAFQGLGATALFENXXXXXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVA 485
           D  ++K  +GLG      N                      L EI  + + KN L +S+A
Sbjct: 397 DDITSKEMRGLGIHVTDNNCEAAGNKDIVIVAVKPNVVKDVLSEIAPVITPKN-LVVSIA 455

Query: 486 MGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRG 602
            G+++ ++E  LP ++RV+RVMPN P LV+ GA+A++ G
Sbjct: 456 AGVSLKSMEKCLPHKSRVVRVMPNIPTLVRAGASAYALG 494


>SB_23255| Best HMM Match : Herpes_UL3 (HMM E-Value=0.93)
          Length = 306

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 221 QACVCFGERLYFGGSGKTRRNHS*LSSFR 307
           +AC   GERLY+GG  +T R    ++S R
Sbjct: 114 RACENTGERLYYGGHARTPRGDFTMASMR 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,331,700
Number of Sequences: 59808
Number of extensions: 362991
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)