Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d20f
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.44 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   3.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.1  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   5.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   5.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.1  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   9.4  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 167 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 310
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 250
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 523 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 422
           DLE   +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 463
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 270 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 91
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 90  EASAHTARTKA 58
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -1

Query: 228 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 67
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 66  TKANKVSLI 40
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 421  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 228 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 112
           SL+ S FFS  YSE   +   +  +   IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 191  EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 286
            +Y KE + EV+    + L ENGK N    AY+
Sbjct: 923  KYDKEAQKEVLIIFAQYLRENGKSNEAAIAYE 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,958
Number of Sequences: 5004
Number of extensions: 47629
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)