Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d20f
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.58
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.8
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 1.8
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 2.4
05_03_0618 - 16262826-16263097,16263111-16263183 28 4.1
05_03_0469 + 14439472-14440905 28 4.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 4.1
11_06_0198 - 21158350-21159528 28 5.4
08_01_0692 + 6121443-6122266,6122812-6124798 28 5.4
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 5.4
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 5.4
04_03_1035 - 21887562-21890030 27 7.2
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 27 9.5
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 9.5
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 27 9.5
04_03_0641 + 18261332-18262423 27 9.5
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 9.5
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 9.5
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 27 9.5
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 347 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 451
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 415 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 329
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -3
Query: 283 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 137
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 136 LLCQYVISSWCKCGVRSQRTHGEDEGK 56
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 134 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 304
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 305 KEIVK 319
+ +
Sbjct: 551 DPMTR 555
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 115 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 29
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 441 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 533
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 119 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 220
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 145 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 270
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 418 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 237 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 58
F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R
Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424
Query: 57 NKVSLILAQWLSL 19
K+ + + W L
Sbjct: 425 AKIYIPVVNWFLL 437
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 180 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 52
A+ + S M T+ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 143 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 268
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYT-SRSCPP 533
PKTK R G+ P W + T SRS PP
Sbjct: 51 PKTKQPRGVKGTRRPSWSSWSSTASRSSPP 80
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 418 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 329
++V L GVM P + +L L+ +++SKL G
Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 107 PRT--DDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDF 277
P+T DV+ + V+ +YE I + E+L+ G++I +K + G MDF
Sbjct: 77 PKTKGSDVVYDSFIRPTVM-QYEPNIEQRLEHLRANSGQLIAFYIKNFADKGTAFFMDF 134
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 267 VFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGA 103
+ LP S+R+ SL+ P F + HLA +V+ + + SC S++GA
Sbjct: 275 IMTLPSSLRKL--SLLGCPSIEFIDNSHLASSVTLKGLNLKLVSC-PDLISIVGA 326
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 84 WLLTPHLHQELMTYWQSS 137
WLL HLH++ TYW+S+
Sbjct: 845 WLL--HLHKDFNTYWESN 860
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 51 LCLPSSSPCVRWLLTPHLHQELMTYWQSSCI*VSSLVNTRPLS 179
LC P + +RW TP + +++ W+ C +++ T+ ++
Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFCALIANAYYTKGMA 245
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 392 HALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE 499
H L D NHN + + K TS K + +PV E
Sbjct: 31 HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRE 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,041
Number of Sequences: 37544
Number of extensions: 319171
Number of successful extensions: 1148
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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