Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d20f
(534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 1.4
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 27 7.3
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 27 7.3
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13) 27 7.3
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5) 27 9.6
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 9.6
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 27 9.6
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 285 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 151
W + +F++ SI + A+L F F H+ AV+YS T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 164 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 331
Y + I K E+ KEK KG+ K R E GKR A +D E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 438 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCP 530
S++P + R S GSL P +T+ TSRS P
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTP 209
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 346 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDH 525
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 526 VHR 534
+ +
Sbjct: 618 IEK 620
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 194 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 283
+ +E+ GE EA KRLI+ GK+ M Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705
>SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 164 YETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ---LWTKDGKEIVKSYFPI 334
Y + KC Y+ + +G ++ + + KR M + LWT ++I K Y
Sbjct: 456 YPAGLTKCLSYVADDRGRALRLVLTKT--EAKRIPMLNRPEEGFLWTSTQQQITKGYESA 513
Query: 335 QFRVIFTEQTVKLI 376
R+ + T +++
Sbjct: 514 HIRLARNDSTTRIV 527
>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
Length = 432
Score = 27.5 bits (58), Expect = 7.3
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = +1
Query: 202 GKEGRGYQGSREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQ 381
G+ R G RE SDR+++ E R D+G G+R+ R D AH
Sbjct: 151 GESSRIRSGDREKSDREKEREKERRRRRHEDEG-SGDRR----------RERRDKDAHDP 199
Query: 382 KGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSIL 516
+ P R + D K ++ ++ ++S L+ R+ +++ L
Sbjct: 200 EDPKRREKDDKKKSRERSKG--DEEHTKDSKLDEEDRIRRREKEL 242
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +2
Query: 158 GEYETAIAKCSEYLKEKKGEVIKE-AVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 334
G ++ A +K+K +VI A+K + ++F + WT ++ P+
Sbjct: 402 GTFKKAKRVIKHAVKDKSSDVIDRWAIKEALA---LQPVEFGGRPWTVSFDLALRGERPL 458
Query: 335 QFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 454
F + VKL K H ALK+ Q+ + ++ ++++
Sbjct: 459 VFEDY--GRHVKLHRKMGHRALKVYSQKKYQQVIIQEAEE 496
>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
Length = 618
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 492 TGVNFQE--TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTVCSVKITLNWMGK*D 319
TGV F E + L L S +++ +++ ++ LRA ++LLF T +L + G D
Sbjct: 517 TGVQFDEFAVYCKPLELASVDSMYIFYKGALGLRANYTLLFPDKTWSYYWTSLEYSGLLD 576
Query: 318 L 316
L
Sbjct: 577 L 577
>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
Length = 235
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -1
Query: 135 CSASTSSVLGASVALEASAHTARTKANKVSLIL----AQWLS 22
CS + S G++ ++EAS+ RT A+ ++ A+W+S
Sbjct: 43 CSGGSKSCCGSASSIEASSIVTRTHASTAFMVAGSNNAEWIS 84
>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 194 YLKEKKGEVIKEAVKRLIENGKR 262
++ KK +IKEA+KR+++N +R
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRR 197
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPP 533
P TK PP K T Y R CPP
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPP 164
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPP 533
P TK PP K T Y R CPP
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPP 178
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPP 533
P TK PP K T Y R CPP
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPP 192
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPP 533
P TK PP K T Y R CPP
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPP 206
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPP 533
P TK PP K T Y R CPP
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPP 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,234
Number of Sequences: 59808
Number of extensions: 373615
Number of successful extensions: 1366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -