Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d18r
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 323 NPHHTLGALYGKILRTLQKMP 261
           NP H   A+ G+I  T+Q +P
Sbjct: 471 NPSHMYRAVCGRIENTIQGLP 491


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 128 AENELNLARKMLNWKPWEPLMAKPPKGQWEWP 33
           ++ E +L+ +M+ +      + KP K   EWP
Sbjct: 515 SDKERDLSLRMILYFSEFAYLGKPTKEDSEWP 546


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 122 FQLELSIPQLD 154
           + L+LS+PQLD
Sbjct: 517 YNLDLSLPQLD 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,235
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)