Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d18f
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992     73   2e-13
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649...    27   5.6  

>03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992
          Length = 195

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/85 (38%), Positives = 46/85 (54%)
 Frame = +1

Query: 76  VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCG 255
           V  N    L  LY + L+ ++ +P+   YRK  E   R R  +  +  D   IE +I CG
Sbjct: 33  VVPNAREVLVGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEDDWKRIEDRIGCG 92

Query: 256 QAEELIIQAENELNLARKMLNWKPW 330
           Q EELI +A++EL L  KM+ W PW
Sbjct: 93  QVEELIEEAQDELKLIAKMIEWDPW 117


>01_05_0024 -
           17262504-17263308,17264251-17264399,17264879-17264978,
           17265829-17265953,17267565-17267743,17269648-17270698
          Length = 802

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +1

Query: 130 TLQKMPETSVYRKYTEQIVRE-RAAVLTQTKDSFEIEKKINCGQAEELIIQAENELNLAR 306
           TL++ PE S   K  ++ V E +A ++    D       +   Q  +  ++ E  +   +
Sbjct: 247 TLEQPPEESWMDKREKESVPEMKAPIMKPAVDGSAAPMHVAEEQPPQTALEKEKAIE--Q 304

Query: 307 KMLNWKPWEPLMAKPPKGQWEWPPSK 384
              N  P +PL+ KPPK     PP++
Sbjct: 305 LAANLPPSKPLIRKPPKAA-PGPPAE 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,088,847
Number of Sequences: 37544
Number of extensions: 177963
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)