Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d18f
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-1|CAA92789.1|  150|Caenorhabditis elegans Hypothetical pr...   108   2e-24
AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p4...    33   0.13 
U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    30   0.94 
Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    27   6.6  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    27   8.8  

>Z68493-1|CAA92789.1|  150|Caenorhabditis elegans Hypothetical
           protein C33A12.1 protein.
          Length = 150

 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/100 (47%), Positives = 67/100 (67%)
 Frame = +1

Query: 76  VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCG 255
           V  +PH  L  +YG+ILR L+++P  + YRKYTE +V++R A++    D  ++E+KI  G
Sbjct: 50  VNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDIKKLEEKIGMG 109

Query: 256 QAEELIIQAENELNLARKMLNWKPWEPLMAKPPKGQWEWP 375
           Q EE+I QAE EL   R +++ K WEPL+   PKGQW WP
Sbjct: 110 QIEEVIEQAEYELETTRAIVDSKAWEPLVESAPKGQWSWP 149


>AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p450
           family protein 29A3 protein.
          Length = 503

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 79  AANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQ 258
           A NPHH + A+Y  +    +K    ++ + +T  ++ ER       ++S E+EK+ +   
Sbjct: 224 AMNPHHQIPAIYWALGHQKKKDEYFNIMKTFTRNVIAERRT----ARESGEVEKETSKRN 279

Query: 259 AEELIIQAENE 291
              L I   NE
Sbjct: 280 MNFLDILLSNE 290


>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 223 SFEIEKKINCGQAEELIIQAENELNLARKMLNWKPWEPLMAKPPK 357
           SFE+ +     Q   L+ ++ +  N+A   LNW+ W P+   PP+
Sbjct: 161 SFELSRFPIDAQECHLVFESYS-YNIAEVRLNWQQWAPVTMPPPE 204


>Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical
           protein W07G1.1 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 45  KKDNRSNRI--GSRRKS-ASHFGRPIW*NLTYSPKNARNI 155
           KKD +  +    SRRKS A H G+P W +L+   KN  ++
Sbjct: 249 KKDEKKRKSVSSSRRKSQAQHHGQPNWGDLSSFTKNIESL 288


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 265 ELIIQAENELNLARKMLNWKPWEPLMA 345
           ELII++    N A+  LNW+ W+P+ +
Sbjct: 175 ELIIESY-AYNAAKVKLNWREWQPVFS 200


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
            protein protein10, isoform b protein.
          Length = 1189

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 94   HTLGALYGKILRTLQKMPETSVYRKYTEQI 183
            H    LY    RT+ K  ET ++R Y+ Q+
Sbjct: 935  HVWSLLYSVGYRTMSKTSETRLHRNYSSQL 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,347
Number of Sequences: 27780
Number of extensions: 169282
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)