Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d17r
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085...    28   8.7  
03_05_0320 - 23084669-23085165,23085192-23086074                       28   8.7  

>06_03_0019 +
           15506702-15506896,15507741-15507875,15508264-15508501,
           15508652-15508855,15508945-15509111
          Length = 312

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 695 TLNDFKYVKVEQNIMSQNKPSSCW*KQT*WTFN 597
           TLN   Y++   NI+S N+  S W K+   TF+
Sbjct: 211 TLNKILYLRPSSNILSHNELVSLWEKKVGKTFD 243


>03_05_0320 - 23084669-23085165,23085192-23086074
          Length = 459

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 574 YWSAETRVLNVHHVCFHQQDDG-LFCDII 657
           YW+ +T +   +++C+   D G LFCD++
Sbjct: 248 YWTTDTVIAFQNYLCWVDYDRGMLFCDVL 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,952
Number of Sequences: 37544
Number of extensions: 264484
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)