Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d17f
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.14
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 29 0.44
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.58
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 28 1.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 1.7
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 27 1.8
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 3.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 3.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 5.4
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 5.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 5.4
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 7.2
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 7.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.14
Identities = 21/85 (24%), Positives = 30/85 (35%)
Frame = +3
Query: 162 LPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETG 341
+P+ Q NYQ Q Y+Q D + L P +F+ G S
Sbjct: 29 MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88
Query: 342 NNIQAQEQGYLKTVGDNQDNTALVQ 416
Q Q GY + +NT +Q
Sbjct: 89 GQQQQQMYGYNGMMPQTMNNTGFMQ 113
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.1 bits (62), Expect = 0.44
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -3
Query: 506 VTGNSETELVSGVLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLLLSLNVVTSF-- 333
+T SE +L VL G +R +G + ++V ++ CL L LNV + F
Sbjct: 161 ITLPSEVDLGLKVLKGACYAMRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFAT 220
Query: 332 I*SFVASV 309
I +F+A+V
Sbjct: 221 IFTFIAAV 228
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 218 LSIFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 87
L++ +GL+V+ + W + +HL++ L R P+ + R S
Sbjct: 14 LALPFRIGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 171 EQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTSYETGNN 347
+ F + + Q+++Y P++ RP+ + + YI I + GTD ++ E +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236
Query: 348 IQAQEQGYLKTV 383
+ +E LKT+
Sbjct: 237 -ELEESVSLKTI 247
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 245 RSEVIDWFCLSIFL 204
R +++ WFC+S+FL
Sbjct: 2194 RRKLVVWFCISVFL 2207
Score = 20.6 bits (41), Expect(2) = 1.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 194 LIVVEVLFKWELVFHLLFWLQR 129
LIV + W L+ +L W+ R
Sbjct: 2237 LIVAFYIVLWALLLGVLAWISR 2258
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 129 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 215
S+ +VE++ PLE N++ QQQ+ R
Sbjct: 25 SIPAVHRVENKHPLESRLKNWEAQQQQIR 53
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 222 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLKT 380
KP+ D +PK + +T T + I R+ Q + K + + QE+ + T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 117 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 254
Q++ + +QQ + Q +Q Q QQQ+ ++ P + F P Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +1
Query: 136 SQNSKWKTNSHLNKTST-TISPSNRNIDKQNQSMTSDLKSN---WRPVPTSPLSVSIRNK 303
S NS + T N + SP N N D Q + T+D N + +P V N+
Sbjct: 317 SSNSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGSAITIAPTPVPRHNR 376
Query: 304 EP 309
P
Sbjct: 377 RP 378
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 232 MTSDLKSNWRPVPTS 276
M+S LKS W PVP++
Sbjct: 1 MSSQLKSTWAPVPST 15
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 241 DLKSNWRPVPTSPLSVSIRNKEPTEATKLHMK 336
DLK +W+ VP+S + + P + KL +K
Sbjct: 430 DLKEHWKEVPSSFTDILTQKTIPCKDHKLKIK 461
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 192 QPQQQEYRQAKPVDDFRPKVQLETSTY 272
+P + E+RQ +P+ F P+ Q + Y
Sbjct: 432 KPLRVEFRQLRPMQQFSPQYQYPSYPY 458
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +1
Query: 139 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTE 315
++S+ + N K + +P+ RN+ +++ S ++ N+ P+S +S +E +E
Sbjct: 1139 KSSRRRKNEKRRKLNEQ-NPNIRNVPERSSSRFQGIRINYSEAPSSSEEISEEEEEISE 1196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,175
Number of Sequences: 5004
Number of extensions: 48408
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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