Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d17f
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 1.0
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 30 1.3
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708... 29 1.8
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 29 2.3
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 3.1
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 29 3.1
04_04_0136 - 23034715-23034794,23034930-23035104 29 3.1
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 29 3.1
03_04_0148 - 17708737-17709027,17709270-17709518,17709713-177098... 28 4.1
01_03_0212 + 13842142-13842634,13842727-13843319 28 4.1
01_03_0209 - 13820980-13821572,13821665-13822157 28 4.1
10_01_0036 + 427678-428029,431043-431968 28 5.4
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 28 5.4
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 27 7.2
01_06_1380 - 36807339-36807562,36807672-36808050 27 7.2
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 27 9.5
03_04_0024 + 16556026-16556588,16556757-16556868 27 9.5
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.5
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/119 (21%), Positives = 52/119 (43%)
Frame = +3
Query: 123 KVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQ 302
+V+ E + + +EQN Q Q+QE + K + P+ + + F+ ++
Sbjct: 1230 RVASVEEIETHNNATIEQNVGYQQLQEQESVEFKETEVLEPQGVIPSHNVSSSEEFNPQE 1289
Query: 303 GTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTAD 479
T E G++ QA+E + ++ +N+A + + AP+ V+ E T D
Sbjct: 1290 TV-----TKEEPGSDTQAEESPVVIEDTEDVNNSAALSE----KIAPEEHVLATETTVD 1339
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +3
Query: 243 PKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLK---TVGDNQDN-TAL 410
P VQ TSTY+P++ ++ + + +QA +L VG++Q + T
Sbjct: 224 PAVQTNTSTYVPLLGGVRDHQAHFAQVNQGQFSPAVQANTSTHLPFSGGVGEHQIHFTPK 283
Query: 411 VQQGSYTYTAPDGQVITVEYTADEFGFRVSGDHIPTPP 524
V QG + P Q T + GFR H TPP
Sbjct: 284 VNQGQF---PPSVQTNTSAHVPYSGGFREHQVHF-TPP 317
>04_03_0217 -
12769956-12770252,12770340-12770490,12770572-12770803,
12770979-12771040,12771189-12771235,12771313-12771431,
12771513-12771671,12771745-12771925,12772010-12772361,
12772673-12772717,12772789-12772854,12772951-12773016,
12773107-12773178,12773283-12773357,12773437-12773508,
12774169-12774240,12774499-12774570,12776252-12776323,
12776400-12776471,12776811-12776997,12778343-12778457
Length = 861
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -3
Query: 512 DVVTGNSETELVSGVLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLLLSLNVVTSF 333
D+V G S L+S + N L +R C G D +V + + L + L LS N +T
Sbjct: 201 DIVNGISPLALISNLTSLNTLILRNCKIYG---DLGAVDFSMFEKLSL-LDLSFNNITGK 256
Query: 332 I*SFVASVGSL-FLIETDNGDVG 267
+ + ++G+L FL +N G
Sbjct: 257 VSQSILNLGNLQFLFLGNNNLAG 279
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +1
Query: 142 NSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEAT 321
N KWK + + ++ K+ +S T + S+W+P P SP+ ++ P +
Sbjct: 518 NLKWKRSQEIKPVKFLSPLDTTDVKKEVESPTRERISSWKPFP-SPVPKPPKDPTPIKEE 576
Query: 322 KLHMKLVT 345
+ K T
Sbjct: 577 SPNKKTDT 584
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDF-RPKVQL 257
PQ + + +QQ++ Q +Q++ Y P Q+Y+Q + +P+ Q+
Sbjct: 238 PQTPTAEQYQQQLQYQQYYQQHYPGYNPYMQQYQQYGQYQQYTQPQTQI 286
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 151 WKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATK 324
W + +N T+ P+ + QN + S +N P P+SP + R + P+ ATK
Sbjct: 488 WAMPASVNSTNP-FQPATYQM--QNPPVASVAPTNTYPAPSSPYAAPPRQQVPSPATK 542
>04_04_0136 - 23034715-23034794,23034930-23035104
Length = 84
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 232 STGFACLYSCCW 197
+TGFAC YSCC+
Sbjct: 2 ATGFACAYSCCY 13
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 157 TNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPV 267
T S L K S P +++++ MTS+ +W P+
Sbjct: 77 TTSELEKDSNAAKPCRSDMNREPTKMTSEATRSWCPI 113
>03_04_0148 -
17708737-17709027,17709270-17709518,17709713-17709851,
17710050-17710268,17710360-17710735,17711741-17711909
Length = 480
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 141 EQQVEDQLPLEQNFNNYQ-PQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQ 302
E QVE L++ + + P + R A FR +LE YIP+ DKE+
Sbjct: 99 EAQVETTNQLKRIVDCIEKPLSNKVRHALETPSFRRMKRLEARLYIPLYEEDKEE 153
>01_03_0212 + 13842142-13842634,13842727-13843319
Length = 361
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 447 GQVITVEYTADEFGFRVSGDHIPTPPPVS 533
G + + E+ GF SG H P P P+S
Sbjct: 110 GDLTSTEFVQQFTGFNASGFHSPPPTPIS 138
>01_03_0209 - 13820980-13821572,13821665-13822157
Length = 361
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 447 GQVITVEYTADEFGFRVSGDHIPTPPPVS 533
G + + E+ GF SG H P P P+S
Sbjct: 110 GDLTSTEFVQQFTGFNASGFHSPPPTPIS 138
>10_01_0036 + 427678-428029,431043-431968
Length = 425
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 465 EYTADEFGFRVSGDHIPTPPP 527
EYT F FRVSGD PPP
Sbjct: 38 EYTPVLFFFRVSGDDDQPPPP 58
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 512 DVVTGNSETELVSGVLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLL-LSLNVVTS 336
D+V G+S +S + ++L +R C G+L + + +TLL LS N +T
Sbjct: 322 DIVNGSSSLGFISNMTSLSNLILRNCKLSGNL-----EAIDFSKFATLTLLDLSFNSITG 376
Query: 335 FI*SFVASVGSL-FLIETDNGDVG 267
+ + ++G L FL +N G
Sbjct: 377 QVPQSILNLGMLEFLFLGNNSLTG 400
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = -3
Query: 470 VLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLLLSLNVVTSFI*SFVASVGSLFLI 291
VL+GN+++ G L + + ++ Q+ + + SF+ + S +
Sbjct: 611 VLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMRSCL 670
Query: 290 ETDNGDVGTGLQLDFRSEVIDWFCLSIFLLL 198
NG +GT +QL +S V + + FL L
Sbjct: 671 NASNGTMGTNVQLGIQSSVYEASLIRGFLYL 701
>01_06_1380 - 36807339-36807562,36807672-36808050
Length = 200
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 56 RNHEAADRNHRSYCRCGGSSPKEG 127
+NH+A +R+H R G SSP G
Sbjct: 64 QNHKARERHHHKKRRRGASSPDSG 87
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 514 GMWSPETLKPNSSAVYSTVMT*PSGAVYV*DPCWTRAVLSWLSPTVF 374
G W PE+L P +A++++ P G + P ++ SWL F
Sbjct: 90 GFWMPESLLPAVAALHTSFAPAPDGVLLASFP---KSGTSWLKALAF 133
>03_04_0024 + 16556026-16556588,16556757-16556868
Length = 224
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 95 CRCGGSSPKEGFVEARTASGRPTP 166
CR GG +EG V R S RP+P
Sbjct: 99 CRGGGGGVEEGRVARRRQSRRPSP 122
>01_07_0124 + 41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 151 WKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSV 288
W T+ + I + I ++ S SD +RP+PT P +V
Sbjct: 948 WLTSVLIGSVGLVIGAILKCIPVESGSDASDRHDGYRPIPTGPSAV 993
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,319
Number of Sequences: 37544
Number of extensions: 348881
Number of successful extensions: 1117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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