Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d17f
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK094798-1|BAC04427.1|  346|Homo sapiens protein ( Homo sapiens ...    31   3.4  
BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein.        30   4.5  
BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein.        30   4.5  
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.        30   4.5  
AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein.              30   4.5  
AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.     30   4.5  
BC130563-1|AAI30564.1|  654|Homo sapiens melanoma inhibitory act...    30   6.0  
BC130537-1|AAI30538.1|  654|Homo sapiens melanoma inhibitory act...    30   6.0  
BC035981-1|AAH35981.1|  434|Homo sapiens MIA2 protein protein.         30   6.0  
AK026057-1|BAB15339.1|  451|Homo sapiens protein ( Homo sapiens ...    30   6.0  
AF390175-1|AAL26990.2|  541|Homo sapiens melanoma inhibitory act...    30   6.0  
EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor coacti...    29   7.9  
BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor coacti...    29   7.9  
BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor coacti...    29   7.9  
AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor coacti...    29   7.9  
AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor coacti...    29   7.9  
AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor coacti...    29   7.9  
AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone recepto...    29   7.9  
AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Can...    29   7.9  
AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor coacti...    29   7.9  

>AK094798-1|BAC04427.1|  346|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37479 fis, clone BRAWH2013748, moderately
           similar to Actin binding LIM protein 1. ).
          Length = 346

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 74  DRNHRSYCRCGGSSPKEGFVEARTASGRPTPT*TKLQQLSAPATGI 211
           D++ RSY +C  SSP         + GR TPT    Q  S P TG+
Sbjct: 119 DQDDRSYKQCRTSSPSS---TGSVSLGRYTPTSRSPQHYSRPDTGV 161


>BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein.
          Length = 1459

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 218
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214


>BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein.
          Length = 1459

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 218
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214


>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
          Length = 4169

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 218
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 3581 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 3615


>AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein.
          Length = 1291

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 218
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1022 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1056


>AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.
          Length = 2055

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 218
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1514 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1548


>BC130563-1|AAI30564.1|  654|Homo sapiens melanoma inhibitory
           activity 2 protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 150 VEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTS 329
           VED+  LE+  NN +PQ +  ++++   D  PK Q E ++    I   +  G  G   TS
Sbjct: 258 VEDENDLEE-LNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTS 316

Query: 330 Y 332
           Y
Sbjct: 317 Y 317


>BC130537-1|AAI30538.1|  654|Homo sapiens melanoma inhibitory
           activity 2 protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 150 VEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTS 329
           VED+  LE+  NN +PQ +  ++++   D  PK Q E ++    I   +  G  G   TS
Sbjct: 258 VEDENDLEE-LNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTS 316

Query: 330 Y 332
           Y
Sbjct: 317 Y 317


>BC035981-1|AAH35981.1|  434|Homo sapiens MIA2 protein protein.
          Length = 434

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 150 VEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTS 329
           VED+  LE+  NN +PQ +  ++++   D  PK Q E ++    I   +  G  G   TS
Sbjct: 258 VEDENDLEE-LNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTS 316

Query: 330 Y 332
           Y
Sbjct: 317 Y 317


>AK026057-1|BAB15339.1|  451|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22404 fis, clone HRC08175. ).
          Length = 451

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 150 VEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTS 329
           VED+  LE+  NN +PQ +  ++++   D  PK Q E ++    I   +  G  G   TS
Sbjct: 55  VEDENDLEE-LNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTS 113

Query: 330 Y 332
           Y
Sbjct: 114 Y 114


>AF390175-1|AAL26990.2|  541|Homo sapiens melanoma inhibitory
           activity protein 2 protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 150 VEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTS 329
           VED+  LE+  NN +PQ +  ++++   D  PK Q E ++    I   +  G  G   TS
Sbjct: 257 VEDENDLEE-LNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTS 315

Query: 330 Y 332
           Y
Sbjct: 316 Y 316


>EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1240 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1289


>BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1419

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1235 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1284


>BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1420

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1236 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1285


>AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1420

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1236 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1285


>AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1240 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1289


>AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor coactivator
            3 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1231 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1280


>AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone receptor
            activator molecule protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1240 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1289


>AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Cancer
            protein.
          Length = 1420

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1236 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1285


>AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor coactivator
            3 isoform a variant protein.
          Length = 1427

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 266
            Q++V++  +QQ + Q   +Q     Q QQQ+ +Q +    F P   +  S
Sbjct: 1243 QQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTAS 1292


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,766,592
Number of Sequences: 237096
Number of extensions: 1859618
Number of successful extensions: 6664
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6176
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)