Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d17f
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    84   1e-18
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             35   5e-04
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.49 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 83.8 bits (198), Expect = 1e-18
 Identities = 41/78 (52%), Positives = 52/78 (66%)
 Frame = +3

Query: 297 EQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTA 476
           E   DG+Y  ++ET N I  QE G  K V DN+  T +V QGS +YTAPDGQ +++ Y A
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQV-DNE--TPVVSQGSDSYTAPDGQQVSITYVA 91

Query: 477 DEFGFRVSGDHIPTPPPV 530
           DE GF+V G HIPT PP+
Sbjct: 92  DENGFQVQGSHIPTAPPI 109


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 114 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPV--DDFRPKVQLETS 266
           PQ +   +P+QQ + Q    Q     Q QQQ+ +Q  P+  DDF P ++ E S
Sbjct: 822 PQAQAQAQPQQQQQQQQQQPQQ-QQQQQQQQQQQQRGPMTNDDFNPNIEEEAS 873



 Score = 28.7 bits (61), Expect = 0.040
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQE---YRQAKPVDDFRPKVQLETSTYIPIIR 287
            Q+    +P+QQ + Q   +    + QPQQQ+    +Q +     +P+ Q +    +  + 
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 288  FDKEQGTDGSYKTSYETGNNIQAQEQ 365
               ++G +     S E  N+ Q Q+Q
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQQQ 1583



 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 117  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAK 224
            QR  ++  +QQ + Q   +Q     Q QQQ+  QA+
Sbjct: 1202 QRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 20 RATRLPHVKPHIRNHEAADRNHRSYC 97
          R TR  H+K H+R H      H S+C
Sbjct: 18 RFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 117 QRKVSLKPEQQVEDQLPLEQN-FNNYQPQQQEYRQ 218
           +++  ++ +QQ + Q    Q+  N  QPQQQ+ +Q
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447



 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 135 KPEQQVEDQLPLEQNFNNYQPQQQEY 212
           +P+QQ + Q   +Q     Q QQQ +
Sbjct: 439 QPQQQQQQQQQQQQQQQQQQQQQQHW 464


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 429 TYTAPDGQVITV 464
           +Y  PDGQVIT+
Sbjct: 14  SYELPDGQVITI 25


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 480 EFGFRVSGDHIPTPP 524
           E+G RV  D I TPP
Sbjct: 424 EYGIRVERDPILTPP 438


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 172 NKTSTTISPSNRNIDKQNQSMTSDLKSN 255
           N+ +   +  N+N +KQN +  +D + N
Sbjct: 439 NQNANNQNADNQNANKQNGNRQNDNRQN 466


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 248 FRSEVIDWFCLSIFLLLGLI 189
           F + VID  CL IF L  +I
Sbjct: 521 FAAMVIDRMCLIIFTLFTII 540


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 384 GDNQDNTALVQQGSYTYT 437
           G ++   A +Q G Y YT
Sbjct: 43  GSDEKRQAAIQSGDYNYT 60


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 6   FTTIHVPHGCRT 41
           F T   PHGC T
Sbjct: 272 FDTTRYPHGCST 283


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 407 SSVVLVITDCLQITLLLSLNVVTSFI 330
           S ++++  D + I  ++SLN +TS++
Sbjct: 402 SQLLVISDDNIHIKGVISLNKLTSYV 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,618
Number of Sequences: 438
Number of extensions: 3845
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)