Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d16r
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 312 3e-86
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 310 8e-86
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 120 1e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 7e-13
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.18
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.95
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 0.95
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.8
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 312 bits (766), Expect = 3e-86
Identities = 141/197 (71%), Positives = 160/197 (81%)
Frame = -3
Query: 622 RFDGXLNVDLTEFQTNLVPYLRIHFPLVTYAPVIXAEKAYHEQLSVAEITNACFEPANQM 443
RF G LNVDL EFQTNLVPY RIHFPLVTY+P++ A KA+HE SV EITN CFEP NQM
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
Query: 442 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVXWCPTGFKVGINYQPPTV 263
VKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFV WCPTGFK+GI Y+PP
Sbjct: 307 VKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQH 366
Query: 262 VPGGDLAKVQRAVCMLSNTTAIAEAWAXLDHKFDLMYAKRAFVHWYVXXXXXXXXXXXXX 83
VPG +AKV RAVCMLSNTT+IAEAW+ LDHKFDLMY+KRAFVHWYV
Sbjct: 367 VPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR 426
Query: 82 EDLAALEKDYEEVGMDS 32
EDLAALE+DYEEVG DS
Sbjct: 427 EDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 310 bits (762), Expect = 8e-86
Identities = 141/197 (71%), Positives = 159/197 (80%)
Frame = -3
Query: 622 RFDGXLNVDLTEFQTNLVPYLRIHFPLVTYAPVIXAEKAYHEQLSVAEITNACFEPANQM 443
RF+G LNVDL EFQTNLVPY RIHFPLVTYAP++ A KA+HE SV EITN CFEP NQM
Sbjct: 243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
Query: 442 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVXWCPTGFKVGINYQPPTV 263
VKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFV WCPTGFK+GI +PP
Sbjct: 303 VKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQH 362
Query: 262 VPGGDLAKVQRAVCMLSNTTAIAEAWAXLDHKFDLMYAKRAFVHWYVXXXXXXXXXXXXX 83
+ G ++AKV RAVCMLSNTT+IAEAW+ LDHKFDLMY+KRAFVHWYV
Sbjct: 363 IEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR 422
Query: 82 EDLAALEKDYEEVGMDS 32
EDLAALE+DYEEVG DS
Sbjct: 423 EDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 120 bits (290), Expect = 1e-28
Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 3/199 (1%)
Frame = -3
Query: 622 RFDGXLNVDLTEFQTNLVPYLRIHFPLVTYAPVIXAEKAYHEQLSVAEITNACFEPANQM 443
RF G LN DL + N+VP+ R+HF +V +AP+ + + +SV E+T F+ N M
Sbjct: 241 RFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300
Query: 442 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVXWCPTGFKVGINYQPPTV 263
V DPRHG+Y+ L+RG V K+V+ I +++TK + FV W P + PP
Sbjct: 301 VAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK- 359
Query: 262 VPGGDLAKVQRAVCMLSNTTAIAEAWAXLDHKFDLMYAKRAFVHWYV---XXXXXXXXXX 92
DL + + + N+T+I E + L +F M+ ++AF+HWY
Sbjct: 360 ----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAE 412
Query: 91 XXXEDLAALEKDYEEVGMD 35
DL + + Y+E G+D
Sbjct: 413 SNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.5 bits (160), Expect = 7e-13
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 622 RFDGXLNVDLTEFQTNLVPYLRIHFPLVTYAPVIXA---EKAYHEQLSVAEITNACFEPA 452
R+ G +N DL +L+P R HF L +Y P E + +V ++ P
Sbjct: 244 RYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPK 303
Query: 451 NQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVXWCPTGFKVGINYQ 275
NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ +
Sbjct: 304 NQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKK 363
Query: 274 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAXLDHKFDLMYAKRAFVHWY 125
P + ++ + ML+N T+IA + ++D + + AF+ Y
Sbjct: 364 SPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQY 408
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.18
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 390 VVTSYPRM*TRPSLPSKPSVLSNSSXGVQPVSRSVSTTSHPPWCP 256
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 390 VVTSYPRM*TRPSLPSKPSVLSNSSXGVQPVSRSVSTTSHPPWCP 256
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 478 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 353
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 350 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 493
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 486 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSXGV 307
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 306 QPVSRSVSTTS 274
PV+ + TTS
Sbjct: 584 TPVTTTNCTTS 594
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 354 SLPSKPSV---LSNSSXGVQPVSRSVSTTSHP 268
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 373 WVRRHHGTAYSKPCTCHDGG 432
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,970
Number of Sequences: 5004
Number of extensions: 49992
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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