Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d15r
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF151814-1|AAD34051.1|  317|Homo sapiens CGI-56 protein protein.       31   5.7  
AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.     31   5.7  

>AF151814-1|AAD34051.1|  317|Homo sapiens CGI-56 protein protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 654 RLVVKTWLT-DLVTVRRALESFFTEVDSVE 740
           RLV+KTWLT DL +  R L + FT+  +VE
Sbjct: 288 RLVLKTWLTWDLKSPLRVLYNLFTKYKNVE 317


>AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.
          Length = 2414

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 317  PFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVL-PQYFKQPNMFFKKVLVY-- 147
            P  LF F +  +  P +S  F S    +     P+  P+L P  F+ P +  +  +++  
Sbjct: 1151 PVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMPLLPPSLFQAPPLPLQPTVLHPG 1210

Query: 146  --HEGELFPYLFNIPHYTP 96
              H  +L P+  NIP   P
Sbjct: 1211 QLHLPQLMPHPANIPFRQP 1229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,201,799
Number of Sequences: 237096
Number of extensions: 2068997
Number of successful extensions: 4340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4340
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)