Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d14r
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    34   0.089
Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   2.5  
Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    29   4.4  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   5.8  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 554 GWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTLALLKF*PSLSN 378
           GW +      C +   +G + E+C C  D CNS    V  T++ L T  L+ F P L N
Sbjct: 89  GWQQKKTGEYCRKSRDYGKKGEICCCADDMCNS----VRQTSLALFTSILIIF-PVLLN 142


>Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical
           protein F58B4.3 protein.
          Length = 125

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = -2

Query: 674 LPDTL-RQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGG 498
           +PDT  RQ C      C K   VV+F         + +        N    C   S FG 
Sbjct: 31  VPDTSQRQECGIGSLTCVK---VVDFTRGTYTKQCQTMNCTLNGMQNAAANCQNSSAFGV 87

Query: 497 RQEVCSCLTDGCNSA 453
               C C  DGCNS+
Sbjct: 88  NGATCCCYGDGCNSS 102


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 360 VTCVHHSSKDNLNRKIH*YKRSLKLKINLKIYFIDNIRRC*YIALKDKY 214
           +T V   +KD  N  ++  + S+    NL I+ I N+R   +IA++ KY
Sbjct: 12  LTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +3

Query: 267 ISLDLFLVLENVCINVSSDLNYPSNYDEHKSPV 365
           I++DLFL+L+++  ++S     PSNYD H+S V
Sbjct: 211 ITIDLFLLLKSMQKSLS-----PSNYDRHRSAV 238


>Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical
           protein F58B4.6 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 524 CYQRSGFGGRQEVCSCLTDGCNSA-SLPVMGTTVMLLTLALLKF 396
           C+  +        C C  DGCNS+ S+  +G++++ + +++  F
Sbjct: 88  CFNTTSGSSVMGTCCCYGDGCNSSPSMLPLGSSILAVMISMFIF 131


>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -2

Query: 716 QCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGMPPDNR--VIRGCGWD 546
           QC    +    ++ L + L+ P +S    C   +   +   M  +P ++   + + C  +
Sbjct: 166 QCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAVPLNSLCFIQKQCPQN 225

Query: 545 ESNYKGRCYQRSGFGGRQEVC 483
              Y+GRC  R GF  +   C
Sbjct: 226 SGCYRGRCMCRCGFAAKNGKC 246


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -2

Query: 716 QCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGMPPDNR--VIRGCGWD 546
           QC    +    ++ L + L+ P +S    C   +   +   M  +P ++   + + C  +
Sbjct: 303 QCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAVPLNSLCFIQKQCPQN 362

Query: 545 ESNYKGRCYQRSGFGGRQEVC 483
              Y+GRC  R GF  +   C
Sbjct: 363 SGCYRGRCMCRCGFAAKNGKC 383


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 578  DNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCN 459
            D+ + R CG ++   + +C  RSG+   QE  +C++D CN
Sbjct: 1571 DSCLNRQCGMNQVCIQDQCQCRSGYLVLQE--TCISDRCN 1608


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 530 GRCYQRSGFG-GRQEVCSCLTDGCNSASLPVMGTTVMLLTLALL 402
           G+C++    G G ++ C C  + CNS++  +  T  +L+ L+L+
Sbjct: 82  GKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGILIILSLV 125


>Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical
           protein R11D1.6 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 112 WTLLF*HLGHVCVNTSMLLELFIVYL 189
           W+L   HL +VCV  +++L  +++YL
Sbjct: 6   WSLFCGHLQNVCVCLTIILNCYMIYL 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,011
Number of Sequences: 27780
Number of extensions: 272336
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)