Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d13f
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    95   6e-21
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.2  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 54/143 (37%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           I+STN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL++GAPD+A+PR+NN  F              + E G G 
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGG 131

Query: 365 G*TVYPPLSSNIAHRGRSVDLAI 433
           G TVYPPLSS  +H G ++DLAI
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAI 154



 Score = 32.7 bits (71), Expect = 0.049
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = +3

Query: 426 LLFFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
           L   SL L GISS                   S  Q+PLF  A+ IT+          AG
Sbjct: 152 LAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAG 211

Query: 606 AITILLTDRTL 638
            + +L +DR L
Sbjct: 212 GLFMLFSDRNL 222


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 447 NVVKKIARSTDLPLCAILDESGG*TVHPVPAPFST 343
           N+V   + +TDL +   +  SGG T+H  P  FST
Sbjct: 3   NIVVLGSMNTDLVMRTKICPSGGETIHGEPDGFST 37


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 301 TPTPLPYIINFKKNCRKWCRNRMNS 375
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,294
Number of Sequences: 5004
Number of extensions: 31907
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)