Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11r
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 260 FTN*E-NYVFYLDSSCSTNFHCPMCCFCYKFN 352
           FT  E N VF    +   NF+  M C  YKF+
Sbjct: 448 FTKFEFNTVFNDQRTVFANFYDAMICVAYKFD 479


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 54   PKLVLLLSGPIMFLVFIINQSRSMASVVW 140
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 54   PKLVLLLSGPIMFLVFIINQSRSMASVVW 140
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 54   PKLVLLLSGPIMFLVFIINQSRSMASVVW 140
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 54   PKLVLLLSGPIMFLVFIINQSRSMASVVW 140
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,500
Number of Sequences: 336
Number of extensions: 2957
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)