Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11r
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749...    91   6e-19
11_06_0446 - 23703088-23703681                                         29   4.8  
05_05_0240 + 23548408-23549408,23549882-23549980,23550282-235503...    28   8.4  

>01_03_0155 +
           13274537-13274741,13274827-13274864,13274909-13274968,
           13275117-13275176,13277072-13277146,13277233-13277346
          Length = 183

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 22/117 (18%)
 Frame = -2

Query: 466 TTSGRKR-LFSKELRCMMYGFGDDQN--------------------PYTESVDFLEDLVI 350
           TT  RKR +F K+L+ MMYGFGDD N                    P  E+V  +ED+V+
Sbjct: 56  TTLKRKRGVFQKDLQHMMYGFGDDPNARNCLGIGCNLCTLCCGTLEPLPETVALVEDIVV 115

Query: 349 EFITETTHRAMEVG-RTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFD 182
           E++T+  H+A  V  + G++  ED ++L+RKD RK  R  +LL+MNEELK+ARKAFD
Sbjct: 116 EYVTDLVHKAQNVASKRGKLLTEDFLYLIRKDVRKLHRATELLSMNEELKQARKAFD 172


>11_06_0446 - 23703088-23703681
          Length = 197

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 28  FFISLLSKVPNWYYFYQVQLCFWYSLS 108
           F  SLL K   W+Y  +V +  WY  S
Sbjct: 82  FLFSLLGKEKQWFYANRVTINIWYKCS 108


>05_05_0240 +
           23548408-23549408,23549882-23549980,23550282-23550354,
           23550416-23550478
          Length = 411

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = -2

Query: 445 LFSKELRCMMYG-FGDDQNPYTESVDFLEDLV-IEFITETTHRAMEVGRTGRVQVEDIIF 272
           LF+K  R ++      D   YT     L+ L   E I +   + ME+       V + I 
Sbjct: 91  LFAKVFRYLLLSKIAPDLTSYTNVAKALQKLDDYELILKFVRQVMEITHDRDPTVMNRIV 150

Query: 271 LVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 170
                  KY ++   L + EELKK ++  D V +
Sbjct: 151 FT---TAKYGQIDKCLIIFEELKKDQRGLDVVTF 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,687,129
Number of Sequences: 37544
Number of extensions: 267298
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)