Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11r
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 42  ALQSPKLVLLLSGPIMFLVFIINQSRSMASVVWPQYGYCW 161
           ++Q+P    L +  +  L+F+I       SV W QY + W
Sbjct: 63  SMQTPTNYYLFNLAVSDLLFLILGLPFELSVFWQQYPWQW 102


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 161 PTVTILWPYNRRHASRLIDNEYQKHNWT 78
           P + I    ++ H  +LI N+Y   N+T
Sbjct: 4   PMIDITMEISKNHKEQLISNDYILDNYT 31


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -2

Query: 451 KRLFSKELRCMMYGFGDDQNPYTE------SVDFLEDLVIEFITETTHRAMEVGR 305
           K  F + +  M   F    +PYT+      SVD L++L+ +  TE TH    V +
Sbjct: 450 KEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAVNK 504


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 371 IDTFSIRVLIITKSIHHTS 427
           +DTFSI V ++  ++H  S
Sbjct: 313 LDTFSICVTVVVLNVHFRS 331


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 91  FWYSLSISLEAWRRLYGHSMVTVGPQHIL 177
           F Y+++ S    ++LYG  ++ +  +H+L
Sbjct: 210 FTYNITNSTPLLKKLYGGPLLRIFTKHML 238


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 91  FWYSLSISLEAWRRLYGHSMVTVGPQHIL 177
           F Y+++ S    ++LYG  ++ +  +H+L
Sbjct: 225 FTYNITNSTPLLKKLYGGPLLRIFTKHML 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,601
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)