Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11f
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    73   4e-14
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    54   2e-08
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   3.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.1  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   9.4  

>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +2

Query: 236 GGTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEV-GRTGR 412
           G   + R+ LF+K+L+ +MY FGDD NP  +S++ LE++V+++I E    A  + G   +
Sbjct: 8   GRPPTRRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNK 67

Query: 413 VQVEDIIFLVRKDARKYARVKDLL 484
           V+V+D  F +R D +K  RV++LL
Sbjct: 68  VKVDDFKFALRDDPKKLGRVEELL 91


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
 Frame = +2

Query: 242 TTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVG-RTGR-- 412
           T +GR   +  E++ MM+  G+ Q+P  E+   +E+L+   + E   +A E+  R G   
Sbjct: 2   TETGRTSKYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRS 61

Query: 413 VQVEDIIFLVRKDARKYARVKDLLTMNEELKKARK 517
           + VED+ FL+R D  K  R+K  L+  E  KKA++
Sbjct: 62  ITVEDLFFLIRHDRAKVNRLKTYLSWKEVRKKAKE 96


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 478 VFNTCILSCIFTN*ENYVFYLDSSCSTNFHCPMCCFCYKFNN 353
           VFN+ I  C   +  N++ YL++SC   +   + C   ++N+
Sbjct: 321 VFNS-ISGCDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 150 FSKSISWPLPLLIRKITLTSLMKKKSNS*VELHP 251
           FS  +S PLP L+ ++     ++ K    V+LHP
Sbjct: 831 FSPFLSKPLPRLLNQVNYYQFIRNKLLKDVKLHP 864


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 646 GITFIRSNYVFGIHYQSV 593
           G+  I+  YVFG H QS+
Sbjct: 156 GVILIQLGYVFGYHVQSI 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,027
Number of Sequences: 5004
Number of extensions: 42491
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)