Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11f
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0)                 162   3e-40
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)                 28   5.7  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0)
          Length = 160

 Score =  162 bits (393), Expect = 3e-40
 Identities = 76/99 (76%), Positives = 85/99 (85%)
 Frame = +2

Query: 248 SGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVED 427
           S RKRLF KELRCMMYGFGDDQ PYTESVD LEDLV+E+ITE T +AM+VG+ G+V  ED
Sbjct: 24  SKRKRLFHKELRCMMYGFGDDQCPYTESVDLLEDLVVEYITEMTLKAMDVGKKGKVHCED 83

Query: 428 IIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVE 544
           I+FL+RKD +KYARVKDLLTMNEELKKARKAFD   Y E
Sbjct: 84  IVFLIRKDPKKYARVKDLLTMNEELKKARKAFDAESYGE 122


>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
          Length = 987

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 367 NRNNT*GNGSW*NRKSPSRRHNFLSS*RCTKVCTC 471
           N++    NG   N  S   R+ ++ S RC K C+C
Sbjct: 836 NKSRRYSNGKIRNNNSNRGRNRYIDSKRCRKSCSC 870


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 377 THRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDL-LTMNEELKKARKAFDEVK 535
           THRA++ GRT + Q  +   + R+      + + L   + E+ KK R+  ++++
Sbjct: 723 THRALKTGRTNKAQYSEATNIYREPYLIQEKTQRLKYAIEEKAKKERERMEQLE 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,636
Number of Sequences: 59808
Number of extensions: 291538
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)