Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d11f
(647 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription facto... 180 5e-45
BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II... 180 5e-45
BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II... 180 5e-45
BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II... 178 2e-44
BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein. 60 5e-09
AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homo... 60 5e-09
AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homo... 60 5e-09
AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homo... 60 5e-09
AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homo... 60 5e-09
AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase compl... 60 5e-09
AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein. 60 5e-09
AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor SU... 57 6e-08
BC050384-1|AAH50384.1| 328|Homo sapiens suppressor of Ty 3 homo... 46 9e-05
AL499610-1|CAH73344.1| 328|Homo sapiens suppressor of Ty 3 homo... 46 9e-05
AL360272-2|CAH70846.1| 328|Homo sapiens suppressor of Ty 3 homo... 46 9e-05
AL161905-2|CAI15664.1| 328|Homo sapiens suppressor of Ty 3 homo... 46 9e-05
AL138880-2|CAI14625.1| 328|Homo sapiens suppressor of Ty 3 homo... 46 9e-05
AY617079-1|AAT40139.1| 933|Homo sapiens NGEP long variant protein. 30 8.2
>X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription factor
TFIID protein.
Length = 124
Score = 180 bits (437), Expect = 5e-45
Identities = 85/104 (81%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Frame = +2
Query: 236 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRT 406
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+AM +GR
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ 78
Query: 407 GRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 538
GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 79 GRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein5 (PGRM) (PGM5) protein.
Length = 124
Score = 180 bits (437), Expect = 5e-45
Identities = 85/104 (81%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Frame = +2
Query: 236 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRT 406
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+AM +GR
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ 78
Query: 407 GRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 538
GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 79 GRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 180 bits (437), Expect = 5e-45
Identities = 85/104 (81%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Frame = +2
Query: 236 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRT 406
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+AM +GR
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ 78
Query: 407 GRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 538
GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 79 GRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 178 bits (433), Expect = 2e-44
Identities = 84/104 (80%), Positives = 90/104 (86%), Gaps = 3/104 (2%)
Frame = +2
Query: 236 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRT 406
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+AM +GR
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ 78
Query: 407 GRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 538
GR QVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 79 GRAQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein.
Length = 370
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 70 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 129
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 130 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 176
>AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase complex
subunit protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein.
Length = 317
Score = 60.5 bits (140), Expect = 5e-09
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD + P E+ +ED+V + +A EV + +
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGAR 76
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 77 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 123
>AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor
SUPT3H protein.
Length = 399
Score = 56.8 bits (131), Expect = 6e-08
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 239 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQ 418
G ++G+ F+ EL+ MMY GD ++ + + +ED+V + +A EV + +
Sbjct: 99 GRSTGKSISFATELQSMMYSLGDARSLFMRTAVLVEDVVHTQLINLLQQAAEVSQLRGAR 158
Query: 419 V---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
V ED++FL+RKD +K R+ + + + K K DE +ED+
Sbjct: 159 VITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDK 205
>BC050384-1|AAH50384.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 293 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV---EDIIFLVRKDARKY 463
Y GD + P E+ +ED+V + +A EV + +V ED++FL+RKD +K
Sbjct: 46 YSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKL 105
Query: 464 ARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
R+ + + + K K DE +ED+
Sbjct: 106 RRLLKYMFIRDYKSKIVKGIDEDDLLEDK 134
>AL499610-1|CAH73344.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 293 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV---EDIIFLVRKDARKY 463
Y GD + P E+ +ED+V + +A EV + +V ED++FL+RKD +K
Sbjct: 46 YSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKL 105
Query: 464 ARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
R+ + + + K K DE +ED+
Sbjct: 106 RRLLKYMFIRDYKSKIVKGIDEDDLLEDK 134
>AL360272-2|CAH70846.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 293 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV---EDIIFLVRKDARKY 463
Y GD + P E+ +ED+V + +A EV + +V ED++FL+RKD +K
Sbjct: 46 YSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKL 105
Query: 464 ARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
R+ + + + K K DE +ED+
Sbjct: 106 RRLLKYMFIRDYKSKIVKGIDEDDLLEDK 134
>AL161905-2|CAI15664.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 293 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV---EDIIFLVRKDARKY 463
Y GD + P E+ +ED+V + +A EV + +V ED++FL+RKD +K
Sbjct: 46 YSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKL 105
Query: 464 ARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
R+ + + + K K DE +ED+
Sbjct: 106 RRLLKYMFIRDYKSKIVKGIDEDDLLEDK 134
>AL138880-2|CAI14625.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 293 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV---EDIIFLVRKDARKY 463
Y GD + P E+ +ED+V + +A EV + +V ED++FL+RKD +K
Sbjct: 46 YSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKL 105
Query: 464 ARVKDLLTMNEELKKARKAFDEVKYVEDQ 550
R+ + + + K K DE +ED+
Sbjct: 106 RRLLKYMFIRDYKSKIVKGIDEDDLLEDK 134
>AY617079-1|AAT40139.1| 933|Homo sapiens NGEP long variant protein.
Length = 933
Score = 29.9 bits (64), Expect = 8.2
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 284 CMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDIIFLVR-KDARK 460
C F DD Y+++ L + + F+ H VGR + V DI V K R+
Sbjct: 827 CRYRAFRDDDGHYSQTYWNLLAIRLAFVIVFEHVVFSVGRLLDLLVPDIPESVEIKVKRE 886
Query: 461 YARVKDLLTMNEELKKARKAFDE 529
Y K L NE L DE
Sbjct: 887 YYLAKQALAENEVLFGTNGTKDE 909
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,300,348
Number of Sequences: 237096
Number of extensions: 1395034
Number of successful extensions: 2023
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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