Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11f
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071439-1|AAL49061.1|  136|Drosophila melanogaster RE52427p pro...   194   1e-49
AE014134-3203|AAF53875.1|  136|Drosophila melanogaster CG10756-P...   194   1e-49
AE014297-3011|AAF55897.2| 1489|Drosophila melanogaster CG7922-PA...    29   5.4  

>AY071439-1|AAL49061.1|  136|Drosophila melanogaster RE52427p
           protein.
          Length = 136

 Score =  194 bits (472), Expect = 1e-49
 Identities = 90/100 (90%), Positives = 96/100 (96%)
 Frame = +2

Query: 242 TTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV 421
           T SGRKRLFSKELRCMM+GFGDD+NPYTE+VD LEDLVIE+I ETTHRAME+GRTGRVQV
Sbjct: 30  TNSGRKRLFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQV 89

Query: 422 EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYV 541
           EDIIFLVRKD RKYARVKDLLTMNEELKKARKAFDE+KYV
Sbjct: 90  EDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYV 129


>AE014134-3203|AAF53875.1|  136|Drosophila melanogaster CG10756-PA
           protein.
          Length = 136

 Score =  194 bits (472), Expect = 1e-49
 Identities = 90/100 (90%), Positives = 96/100 (96%)
 Frame = +2

Query: 242 TTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQV 421
           T SGRKRLFSKELRCMM+GFGDD+NPYTE+VD LEDLVIE+I ETTHRAME+GRTGRVQV
Sbjct: 30  TNSGRKRLFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQV 89

Query: 422 EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYV 541
           EDIIFLVRKD RKYARVKDLLTMNEELKKARKAFDE+KYV
Sbjct: 90  EDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYV 129


>AE014297-3011|AAF55897.2| 1489|Drosophila melanogaster CG7922-PA
           protein.
          Length = 1489

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 368 TETTHRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKK 508
           T  T     +GRTGR +  +++ LV  + R+   +KD+L   +++ K
Sbjct: 523 TNPTRFIQRIGRTGRKKNGEVVMLV-TEGREQQVLKDVLANKDQINK 568


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,875,598
Number of Sequences: 53049
Number of extensions: 430661
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)