Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d11f
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical p...   109   2e-24
AC006632-3|AAK85467.1|  183|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    28   6.6  
Z19152-10|CAA79545.2|  348|Caenorhabditis elegans Hypothetical p...    27   8.7  

>Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical
           protein C14A4.10 protein.
          Length = 121

 Score =  109 bits (261), Expect = 2e-24
 Identities = 46/94 (48%), Positives = 74/94 (78%)
 Frame = +2

Query: 254 RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDII 433
           +K +  ++LR M+YGFGDD+ PY +++D LE +V+ +I E    AM+VG+  ++ +EDI 
Sbjct: 25  KKHVLRRDLRSMVYGFGDDKEPYDKTLDTLEAIVLNYIKELCQLAMKVGKPDKMALEDIH 84

Query: 434 FLVRKDARKYARVKDLLTMNEELKKARKAFDEVK 535
           +L+R+D +K++RVKDLL+M+EELKKARK F+++K
Sbjct: 85  YLIRRDPKKFSRVKDLLSMSEELKKARKQFEDMK 118


>AC006632-3|AAK85467.1|  183|Caenorhabditis elegans Hypothetical
           protein F28A10.10 protein.
          Length = 183

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 317 PYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDIIFLVRKDARKYAR 469
           P+  SVDFLE++ +    +   R +E  RT  V   D I  + +D  + AR
Sbjct: 115 PWEVSVDFLEEMKMYAEHKAAGRFLETTRTEGVSTSDSICKIIRDRDELAR 165


>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 486 VRRSLTRAYFRASLRTKKIMSSTWTLPVLPTS--IALC 379
           V + + R YF +SL T   ++S W+L  +P +  +A C
Sbjct: 253 VEQEVYRTYFSSSLSTMTCVNSKWSLNSIPLTAPVAAC 290


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 418 LDSSCSTNFHCPMCCFC 368
           L+ SCS ++HCP C  C
Sbjct: 372 LNLSCSRDYHCPACEVC 388


>Z19152-10|CAA79545.2|  348|Caenorhabditis elegans Hypothetical
           protein B0464.8 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 287 MMYGFGDDQNPYTESVDFLEDLV 355
           +M+  GDD+NP +E+ DF+ +++
Sbjct: 44  LMFTSGDDENPLSENEDFVVNIL 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,058,101
Number of Sequences: 27780
Number of extensions: 233152
Number of successful extensions: 576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)