Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d08f
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    28   1.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.0  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   4.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.9  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.9  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 407 HNVKKVNDAFVSSGDFQQLPVNSSKNEPMIT--LPSPKLDNVWAAINV 544
           H +KK+ND     G   QLP+    NE  +T  +  PK  + + A N+
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNI 159


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +2

Query: 116 NSFELIIAQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVD 295
           N  E I+A +   T   L+F +   C L+K++ +    F   ++R++ +EN DLK   ++
Sbjct: 457 NLVERIVALEDFSTSRSLLFAIL-LCLLRKLTSLN---FEFMKLRDSLQENADLKQIKIE 512

Query: 296 MGK 304
             K
Sbjct: 513 ENK 515


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +2

Query: 107  EDSNSFELIIAQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMP 286
            E+S+   L++   K +TL+KLI         +K + + P   T   + E + +   L+  
Sbjct: 1172 ENSDEIILVLILTKNITLAKLITSRMSVDFSEKYTQLIPVITTYTHLSEVENKKYSLRFN 1231

Query: 287  NVD 295
            ++D
Sbjct: 1232 SID 1234


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 245 IRETQRENRDLKMPNVDMG--KKPDKYFSFTNVELPVKYNSK-FMNSIW 382
           +++ ++   D  + +V  G  KK D+  SFT V +  KYN K + N  W
Sbjct: 107 VKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSW 155


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 206 MSCIPPSAFTAGRI-RETQRENRDLKMPNVDMGK 304
           M C+PPS  T G   +E + E  ++++ +++ G+
Sbjct: 358 MQCLPPSYETMGPCEKEMKEETNEVEIASIESGE 391


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 186  LHSSKINLLSVTVFFCAMMSSKLLESSQTLRYVQRNFLGFSSTMNYTDQ 40
            LH+SK++ LS T    + ++  L E+++ L   +R F  F S  +  DQ
Sbjct: 1415 LHNSKVSKLSFTKSNKSTLNPNLKETAEEL---ERKFREFCSNKDELDQ 1460


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 395 RYSPHNVKKVNDAFVSSGDFQQLPVNSSKNEPMITLPS 508
           R S  N KK +D   S+GD     V+S  +  ++ LPS
Sbjct: 417 RSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPS 454


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 389 YNRYSPHNVKKVNDAFVSSGDFQQLPVNSSKN----EPMITLPSPKLDNVW 529
           +N  S  +VKK  +  + S    QL  NS  +       +T+P  K+D VW
Sbjct: 530 HNSPSLLSVKKRQNNHIRSNTLIQLNSNSKDSTIFPRRSVTVPGDKIDTVW 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,658
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)