Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d08f
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    31   0.86 
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42...    29   3.5  
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    28   4.6  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    28   6.1  
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619     27   8.0  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    27   8.0  

>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 314  KYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVNDAFVSSGD-----FQQLPVNSS 478
            KY    +  +  K+  K + S+ G   R    N  K++ A  S+GD        +P+N S
Sbjct: 1530 KYQQLKSKLVEKKWKLKIIYSMLGNVER---GNTSKIHQAKKSTGDCVLGPILNMPINES 1586

Query: 479  KNEPMITLPSPKLDNVWAAINVSQS 553
            K + ++   S     VW AI   +S
Sbjct: 1587 KRQRVLVASSILYSEVWHAIGRDRS 1611


>11_01_0056 +
           427376-427408,427589-427694,427777-427823,427907-428065,
           429018-429092,429379-429973,430529-430943,431105-431118,
           431476-431591
          Length = 519

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +2

Query: 293 DMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVNDAFVSSGDFQQLPVN 472
           +M +K +K  S  ++  P   +++F +S  G+         KK  + + S   + Q+P +
Sbjct: 120 EMSEKDEKIKSLVSMGFPEDEDTEF-SSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFD 178

Query: 473 SSKNEPM 493
            S  EPM
Sbjct: 179 GSHEEPM 185


>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 419 KVNDAFVSSGDFQQLPVNSSKNEPM 493
           KV D F+ + ++ ++PV  S +EP+
Sbjct: 244 KVMDVFIKAAEYMEMPVRRSDDEPL 268


>06_02_0041 + 10889741-10890092,10890161-10890235,10891139-10892341,
            10892970-10893253,10893343-10893459,10894126-10894388,
            10894557-10894725,10894838-10895110,10895674-10895718,
            10896472-10896591,10896926-10896987,10897296-10897318,
            10897911-10898128
          Length = 1067

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 533  RPKRCLVSATAELSWVRS*RNSQAIAENPQKKR 435
            +PK C V  +  ++W++S +N + IA+    KR
Sbjct: 940  KPKACNVQVSIGIAWLKSCKNRKKIAQEFLNKR 972


>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
          Length = 398

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 534 AAQTLSSFGDGRVIMGSFLEEFTG----NC*KSPEETKASLTFFT 412
           A  T+ S   G VIMG ++ EF G    N     ++ +  L FFT
Sbjct: 212 AISTIRSMTPGAVIMGDYVVEFNGGSNNNLLSDGDDLEERLNFFT 256


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +2

Query: 221 PSAFTAGRIRETQRENRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRY 400
           PS +T      +  EN+    P   +G+   +      V LPV+Y+  F+ S+     R 
Sbjct: 154 PSFYTKAT-ESSSTENKSSSKPPKFLGENSSRRPHHRTVGLPVQYSDFFITSLGEIDKRP 212

Query: 401 SPHN 412
           S HN
Sbjct: 213 SYHN 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,054
Number of Sequences: 37544
Number of extensions: 302560
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)