Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d08f
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        29   3.6  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)                   28   4.7  
SB_22102| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_36216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)          27   8.2  
SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 430 VIDFFHIVRRITVVLSPDTIHEFAVILYR*FNICETEIFVRFLAHINIGHLQV 272
           V+    +  R  V+ SP     + +I+    N C   I+   ++H N GHL++
Sbjct: 705 VVSALSLFSRRRVISSPSVFRIYPIIISH-RNSCHLRIYPIIISHRNSGHLRI 756


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +2

Query: 323 SFTNVELP----VKYNSKFMN--SIWGKYNRYSPHNVK 418
           S TN +LP     K+N K  N  S WGK++  SP  VK
Sbjct: 89  SATNTKLPKLTITKFNGKSENWLSFWGKFSCTSPRKVK 126


>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
          Length = 855

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 167 LIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVDMGK 304
           L FELC +CE +K S + P A     +    + N+ ++M N+D+ K
Sbjct: 480 LNFELCFSCEDEKESDLYPDAIA---LSMDPKHNKLVRMGNLDIDK 522


>SB_22102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 290 VDMGKKPDKYFSFTNVELPVKY--NSKFMNSIWGKYNRYSPHNVKKVNDAF 436
           VD+GK+    ++   V++P     N KF   +W  Y R    N+  VND F
Sbjct: 15  VDLGKETP--YNIHEVQIPKLQILNLKFCGMLWLFYKRQCEGNIIAVNDYF 63


>SB_36216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 391 VLSPDTIHEFAVILYR*FNICETEIFVRFLAHINIGHLQVTIF 263
           +LSPD +    VI Y   +IC   IFV  L+   + HL +  F
Sbjct: 95  ILSPDEVVRIGVITYSTASIC--LIFVMVLSPAKMEHLALLFF 135


>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
          Length = 836

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
 Frame = +2

Query: 230 FTAGRIRETQRENRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNR---- 397
           ++   IR++ R N     PN+    + + ++S  N+   V+ N  +      +  R    
Sbjct: 181 YSPPNIRQSVRANPHYSPPNISQSVRANPHYSPPNIRQSVRANPHYSPPNISQSVRANPH 240

Query: 398 YSPHNVK---KVNDAFVSSGDFQQLPVNSSKNEPMITLPSPKLDNVWAAINVSQSH*Q 562
           YSP N +   + N  +      Q +  N   + P I+  S + +  ++  N+SQS+ Q
Sbjct: 241 YSPPNFRQSVRANPHYSLPNISQSVRANPHYSPPNIS-QSVRANPHYSPPNISQSYGQ 297


>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 168 NLLSVTVFFCAMMSSKLLESSQTLRYVQRNFLGFSSTMNYT 46
           N  S+   F A +   L+    T+RY Q + + F  T+ YT
Sbjct: 66  NRWSLLDHFLAFLQVSLIRFVYTIRYAQESLIRFVCTIRYT 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,919
Number of Sequences: 59808
Number of extensions: 374911
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)