Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d08f
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z34800-3|CAA84322.2|  722|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z34800-2|CAA84324.2|  842|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...    27   7.2  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   7.2  
AF016428-5|ABR92601.1|  152|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical
           protein F25H9.5 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 107 EDSNSFELIIAQKKTVTLSKLIFELCKAC 193
           E+ N  EL I   KT    KL+F L K C
Sbjct: 86  EEENGIELNIESGKTADTKKLLFHLAKEC 114


>Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical
           protein T24F1.4 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 305 SCPYQHWASSSHDFHVEFHGYAQP*KRMAECKTFSS 198
           +CP  HW  ++ D+ +  HG A P  ++  C  + S
Sbjct: 29  NCP-PHWTGAACDWPICVHGRANPATKLCNCHNYYS 63


>Z34800-3|CAA84322.2|  722|Caenorhabditis elegans Hypothetical
           protein F45H7.2b protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 354 YFTGNSTFVKLKYLSGFLPISTLGIF-KSRFSR*VSRIRPAVKADGGMQDIFFSSQALHS 178
           YF        +K+L    P  T+GIF K+     ++ +R  +++  G  D+F     L S
Sbjct: 281 YFLPRPILEVMKFLRNIAP-ETVGIFRKNGVKSRIAELRSIIESYSGNTDVFVGENLLDS 339

Query: 177 SKIN 166
           ++++
Sbjct: 340 TQVH 343


>Z34800-2|CAA84324.2|  842|Caenorhabditis elegans Hypothetical
           protein F45H7.2a protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 354 YFTGNSTFVKLKYLSGFLPISTLGIF-KSRFSR*VSRIRPAVKADGGMQDIFFSSQALHS 178
           YF        +K+L    P  T+GIF K+     ++ +R  +++  G  D+F     L S
Sbjct: 401 YFLPRPILEVMKFLRNIAP-ETVGIFRKNGVKSRIAELRSIIESYSGNTDVFVGENLLDS 459

Query: 177 SKIN 166
           ++++
Sbjct: 460 TQVH 463


>AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical
           protein B0511.9a protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
 Frame = +2

Query: 89  TYRSVCEDSNSFELIIAQKKTVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 256
           T   +CED    + +  Q     L  +I   C+  ++ +M  +    PP   T   +R  
Sbjct: 9   TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66

Query: 257 QRENRDLKMPNVDMGKKPDKYFSFTNVELPV 349
            R+NRD+  P+     +     + T+   PV
Sbjct: 67  DRKNRDVPGPSTGECTRTSIAPTLTSARTPV 97


>AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical
           protein C08E3.6 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +2

Query: 266 NRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVNDAFVSS 445
           N+DLK+  V+ GK   + F   N  +  K   KF+  I    N     + K V   FVS 
Sbjct: 177 NKDLKLM-VESGKAQMELFRLDNKGIQKKSRKKFIAGIEKALNSAKNLSSKTVQTQFVSY 235

Query: 446 GDFQQL 463
            +  QL
Sbjct: 236 PELAQL 241


>AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical
           protein B0511.9b protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 89  TYRSVCEDSNSFELIIAQKKTVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 256
           T   +CED    + +  Q     L  +I   C+  ++ +M  +    PP   T   +R  
Sbjct: 9   TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66

Query: 257 QRENRDLKMPN 289
            R+NRD+  P+
Sbjct: 67  DRKNRDVPGPS 77


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = +2

Query: 230 FTAGRIRETQRENRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 406
           F + ++ E  ++ ++  +    +GK   +YF+  +VE  V  N K FM       + +  
Sbjct: 485 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 544

Query: 407 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 538
            +   +ND   S  D      F+    + +  E +I L +PK DNV A I
Sbjct: 545 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 593


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = +2

Query: 230 FTAGRIRETQRENRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 406
           F + ++ E  ++ ++  +    +GK   +YF+  +VE  V  N K FM       + +  
Sbjct: 557 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 616

Query: 407 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 538
            +   +ND   S  D      F+    + +  E +I L +PK DNV A I
Sbjct: 617 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 665


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 CELKKMSCIPPSAFTAGRIRETQREN 268
           C  KK++ IPPSAF + R  + +  N
Sbjct: 373 CREKKLAVIPPSAFYSARDNKLKNSN 398


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 CELKKMSCIPPSAFTAGRIRETQREN 268
           C  KK++ IPPSAF + R  + +  N
Sbjct: 390 CREKKLAVIPPSAFYSARDNKLKNSN 415


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = +2

Query: 230 FTAGRIRETQRENRDLKMPNVDMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 406
           F + ++ E  ++ ++  +    +GK   +YF+  +VE  V  N K FM       + +  
Sbjct: 557 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 616

Query: 407 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 538
            +   +ND   S  D      F+    + +  E +I L +PK DNV A I
Sbjct: 617 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 665


>AF016428-5|ABR92601.1|  152|Caenorhabditis elegans Hypothetical
           protein T05C3.6b protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 353 YNSKFMNSIWGKYNRYSPHNV 415
           Y +   N+ W  Y RYSPH +
Sbjct: 129 YTTDDTNTSWNVYRRYSPHEI 149


>AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical
           protein R193.3 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 146 KTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVD 295
           KTV+ +K +F+  K C LKK   +    F   +    +++N+D ++ N D
Sbjct: 7   KTVSKNKNMFQKTKTC-LKKRKSVSKKLFRKTKTCFKKQKNKDKQIRNKD 55


>Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical
           protein ZC443.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 302 KKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRYS 403
           ++ D+++++  V  P K+N   M SI    NR+S
Sbjct: 41  ERVDEFYNYIKVYTPSKHNDLCMMSITADINRFS 74


>AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical
           protein M70.3b protein.
          Length = 886

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 295 INIGHLQVTIFTLSFTDTPSRKSGWRNARHFLQFT 191
           I IG L +++F +S   +PS++S      HF  F+
Sbjct: 7   IIIGILLISVFCISSGSSPSKQSETAKTSHFTDFS 41


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 139 CNDELKTIGVFANAAVRATKFSWIQQHHELH 47
           C++EL ++GVF+    + T  S ++ H ++H
Sbjct: 51  CSEELISMGVFSALGGKQTTLSDMKSHSQIH 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,202
Number of Sequences: 27780
Number of extensions: 294251
Number of successful extensions: 812
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)