Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d08f
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
 Frame = +2

Query: 308 PDKYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVND-----------AFVSSGDF 454
           PD +    N  LP   ++   NS  G +++     VKK  D           +  ++G+ 
Sbjct: 664 PDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNV 723

Query: 455 QQLPVNSSKNEPMITLPSPKL 517
             L  N++ N   + +P   L
Sbjct: 724 SYLTTNNTSNNSQLQIPRASL 744


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 183 VKPVN*RKCLAFRHPLLRLGVSVKLNVKIVT*RCPMLIWARN 308
           V  V+  K L   H   R+G +V++   +     P L+W RN
Sbjct: 306 VSVVSLDKSLEVNHISARVGDNVEIKCDVTGTPPPPLVWRRN 347


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 353 YNSKFMNSIWGKYNRYSPHNVKKVNDAFVSSGDFQQLPV 469
           YN+   N+ +  YN  + +N KK+   + +  + +Q+PV
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKKL---YYNIINIEQIPV 364


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 302 KKPDKYFSFTNVELPVKYNSK 364
           KKP + F F  +   VK+ SK
Sbjct: 438 KKPRRKFHFKQIARAVKFTSK 458


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 378 ILFMNLLLYFTGNSTFVKLKYLSGFLPISTLGIFK 274
           +LF+ L  Y T    F K + + G  P+   G  K
Sbjct: 13  VLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTK 47


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 240 PAVKADGGMQDIFFSSQALHSSKINLL 160
           PA  AD G+ D+  S+ +  +   NLL
Sbjct: 242 PASPADSGVSDVESSTSSGGNEDANLL 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,867
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)