Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d07f
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.6
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 3.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 5.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 6.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 6.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.8
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.8
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 354 PSTRLSKSPMPTLHP-TKKKSMQPRPYCRMTR*PWKTSMMPILTW--PLIPSRSQPSGH- 521
P + SP P L P ++ S++ + ++ +PI T PLIPS SQ S H
Sbjct: 42 PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101
Query: 522 TLRKSS 539
T+R S
Sbjct: 102 TIRHES 107
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 374 ESNANIASYQKEINATKALLPYDQMTMEDFYDAH----PDLALDPIKKPTFWPHTPEEQL 541
E +A I ++ + PYD + +ED +++ P++ LDP F + PEE
Sbjct: 661 EDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNIELDPY---AFKLYVPEEDF 717
Query: 542 DYVDP 556
DP
Sbjct: 718 IENDP 722
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSL 575
P T+ P+ + PL+ S P + + S S + +QRN L L
Sbjct: 47 PRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFL 88
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 125 QKAHLAAFKIKSDNYLRRVLANPPEPPKIN 214
Q + + FK S++YL + ++ PE P++N
Sbjct: 72 QSSTESLFKADSEDYLCKKVSKGPESPRVN 101
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 141 LLSK*NPIIISEGY*PIHLNRPRLTGLCTNRLYLFL 248
LL NPI S HLN+ +T LC N FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 47 KRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAV 223
+R A R + + WA+L + + + SD+YL L NP K + A+
Sbjct: 301 ERSVSAMRNTFQLIKWASLLKYPLVPELTPAVVENLDSDSYLAIALINPTSQVKASKAI 359
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +2
Query: 335 WNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTF 514
+ Q K A Q+ YQ+++ + +ALL + +AHP + P P+
Sbjct: 114 FQQEKEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPAPS- 172
Query: 515 WPHTPEEQLDYVDP 556
P+TP + + P
Sbjct: 173 -PNTPSGNANQLTP 185
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 381 MPTLHPTKKKSMQPRPYCRMTR*PWKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQR 560
+P L P S +P+P R S M + P +PS S SG +L SS S+ R
Sbjct: 460 VPDLPPLGSLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSG-SLANSSEHSSSPR 518
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 350 NAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPD 481
+++DAF+ E+ + + I+ LL + + +D D HP+
Sbjct: 87 SSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPE 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,862
Number of Sequences: 5004
Number of extensions: 60237
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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