Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d07f
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344... 31 0.73
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 29 2.2
02_05_1351 - 35855543-35856751 29 2.2
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 29 3.0
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 3.9
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 5.2
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 28 6.8
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 28 6.8
10_08_0535 + 18613223-18613717,18615858-18616373 28 6.8
08_02_0311 - 15635165-15635590,15635777-15638698 28 6.8
12_02_1109 + 26151421-26153601 27 9.0
09_04_0220 - 15813809-15815380 27 9.0
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 27 9.0
>03_01_0448 -
3444608-3444814,3446419-3446497,3446567-3446691,
3446765-3446809,3447070-3447165,3447344-3447417,
3447526-3447649,3447975-3448109,3448206-3448535,
3448610-3448762,3448840-3449391,3449569-3449648,
3450395-3450506,3450579-3450749,3450820-3450879
Length = 780
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 334 VESSQECHRRVYPRVQCQHCILPKRNQCNQGPTAV*PDDHGRLL*CP 474
+E S+ C + R+ C+H + PKR +G PD R L CP
Sbjct: 34 IEDSEYCGEELGTRLTCRHGLTPKRRTAWEG-----PDTGRRFLGCP 75
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 560 SLGRHSRAALPECVARRLAS*WDQGPGQDGHHRSLPWS 447
SL S+A E +A+ L + + G+D HH+ LPWS
Sbjct: 14 SLDMSSQAEESEMMAQLLGTCFPSN-GEDDHHQELPWS 50
>02_05_1351 - 35855543-35856751
Length = 402
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 354 PSTRLSKSPMPTLHPTKKKSMQPRPY 431
PS + +P+P +HP+ S P PY
Sbjct: 179 PSPPIPATPLPRVHPSSSSSPSPSPY 204
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 306 TLRRHL*NRS-GIKSRMPSTRLSKSPMPTLHPTKKKSMQPRP 428
T R H +R+ G ++R+P R ++ P P P+++ S +P
Sbjct: 56 TARGHSVHRAQGFEARLPPLRSARLPSPEAEPSRRSSAAEKP 97
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 330 RSGIKSRMPSTRLSKSPMPTLHPTKKKSMQPRPYCRM-TR*PWKTSMMPILTWPL-IPSR 503
R+ K+ PS+R P H T + S RP R+ T P +TS+ P P IP R
Sbjct: 13 RAFTKADFPSSRKPYRAEPWAHTTDRDSRATRPRARVPTESPTRTSLGPTCHPPFPIPVR 72
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 407 EINATKALLPYDQMTMEDFYDAHPDLALDPI 499
+ NAT P+ + M HPDLA+DP+
Sbjct: 464 DFNATPGSTPHGLLAMGKVDLMHPDLAIDPL 494
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 497 WDQGPGQDGHHRSLPWSSGHTAVGPWLH*FLFGR 396
W G QDGH R + W GH +G W + GR
Sbjct: 206 WRDGL-QDGHGRYI-WRGGHEYIGTWKAGEMHGR 237
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 497 WDQGPGQDGHHRSLPWSSGHTAVGPWLH*FLFGR 396
W G QDGH R + W GH +G W + GR
Sbjct: 207 WRDGL-QDGHGRYI-WRGGHEYIGTWKAGEMHGR 238
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -1
Query: 344 LDSTAILQVPSECQLGMEFLELHIASGMCLPFQE----*VQPVC 225
+D TA LQV E LG+ +L + A M L F E ++P+C
Sbjct: 202 IDRTAALQVRRELWLGLAYLVVQTAGFMRLTFWELSWDVMEPIC 245
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 44 KKRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAV 223
K RR++ + + V L + + A A +K +LR A+P E PK+ A
Sbjct: 477 KDRRRVKREFDEFKVRINGLPDSIRRRSDAFNAREDMKMLKHLRETGADPSEQPKVKKAT 536
Query: 224 Y 226
+
Sbjct: 537 W 537
>12_02_1109 + 26151421-26153601
Length = 726
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 357 STRLSKSPMPTLHPTKKKSMQPRPYC 434
ST L+K+P P LH +QPR C
Sbjct: 2 STHLTKNPSPLLHRHLHLLLQPRRLC 27
>09_04_0220 - 15813809-15815380
Length = 523
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 276 YCFWNVSTIPGIGTACLYTA-QLILGGSGGLASTLRR*LS 160
YC+++V+ G+GT +Y A QL L S A+ R LS
Sbjct: 48 YCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLS 87
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 27.5 bits (58), Expect = 9.0
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = -2
Query: 502 LDGIKGQVRMGIIEVFHGHLVIRQ*GLGCIDFFLVGCNVGIGLLDKRV--DGILDLIPLR 329
LDG + +MGI VF +L D L+GC V I +++K + G++ L+ +R
Sbjct: 177 LDGFLAR-KMGINSVFGSYLD------PLADKVLIGC-VAIAMVEKDLLHPGLVGLVVVR 228
Query: 328 --------FYKCRLSVSWVWNF*SFILLLECVYHSRNRYSLFVHSPVN 209
YK S+ W WN S + L+ ++ + + LF+ S VN
Sbjct: 229 DLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHREKVK-PLFI-SKVN 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,473
Number of Sequences: 37544
Number of extensions: 429385
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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